Browse Element(s) Details


Os.46715.1.S1_at

Description gb:NM_195143.1
DB_XREF= gi:37531645
TID=Os.46715.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46715 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0051J07.15), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0980010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g185203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g247802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g180901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g233101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g316401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g048301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g221001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g212901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g384101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g115401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g220301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g265201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g295301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g351401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g243001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09750OsAffx.30361.1.S1_at10/1110+5041443..5042093hypothetical protein
LOC_Os10g09760OsAffx.18195.1.S1_at11/1110+5044197..5044844expressed protein
LOC_Os10g09770OsAffx.18196.1.S1_at11/1110+5052329..5052742hypothetical protein
LOC_Os10g09780OsAffx.20679.1.S1_at11/1110+5056051..5057154hypothetical protein
LOC_Os10g09780Os.25513.1.S1_at1/1110+5056051..5057154hypothetical protein
LOC_Os10g09790OsAffx.8429.1.S1_at10/1110+5060802..5063058expressed protein
LOC_Os10g09800Os.46715.1.S1_x_at11/1110+5066318..5068260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09800Os.46715.1.S1_at10/1110+5066318..5068260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09810OsAffx.361.1.S1_at11/1110+5068846..5075243retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09820OsAffx.30362.1.S1_at11/1110+5081067..5084708No apical meristem protein
LOC_Os10g09830NANA10+5086662..5087024hypothetical protein
LOC_Os10g09850Os.17419.1.S1_at11/1110+5091636..509604439 kDa EF-Hand containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46715.1.S1_at--428--4651Chr10:5066403..5066423 (21 bp)
GCGTCAACGCGTGGCAAGCGTTTGT
LOC_Os10g09800
Os.46715.1.S1_at--44--2611NONE
AACGCGTGGCAAGCGTTTGTTGCTT
NONE
Os.46715.1.S1_at--727--16312Chr10:5067805..5067826 (22 bp)
AGCGTTTGTTGCTTGTGGGTCAGTC
LOC_Os10g09800
Os.46715.1.S1_at--652--7215Chr12:2069594..2069764 (25 bp)
GTCGATATCATGTGTTAGTGATGGT
LOC_Os12g04830
Os.46715.1.S1_at--940--5037Chr10:5068053..5068077 (25 bp)
GCAGACCGATGGAGCTCATATCAGT
LOC_Os10g09800
Os.46715.1.S1_at--220--5833Chr10:5068056..5068080 (25 bp)
GACCGATGGAGCTCATATCAGTGGT
LOC_Os10g09800
Os.46715.1.S1_at--1106--8071Chr10:5068063..5068087 (25 bp)
GGAGCTCATATCAGTGGTGTGTCTA
LOC_Os10g09800
Os.46715.1.S1_at--292--251Chr10:5068070..5068094 (25 bp)
ATATCAGTGGTGTGTCTAGCAGCAT
LOC_Os10g09800
Os.46715.1.S1_at--320--9651Chr10:5068073..5068097 (25 bp)
TCAGTGGTGTGTCTAGCAGCATTCC
LOC_Os10g09800
Os.46715.1.S1_at--897--7491Chr10:5068076..5068100 (25 bp)
GTGGTGTGTCTAGCAGCATTCCATC
LOC_Os10g09800
Os.46715.1.S1_at--961--8671Chr10:5068080..5068104 (25 bp)
TGTGTCTAGCAGCATTCCATCTCCA
LOC_Os10g09800
Target Sequence 
GCGTCAACGCGTGGCAAGCGTTTGTTGCTTGTGGGTCAGTCGGCGGTCGATATCATGTGTTAGTGATGGTGAAGACAAAG
AATGATCCCCGTGACTCCAACGACGCCAGTGGCAGCGAAGAGCAGACCGATGGAGCTCATATCAGTGGTGTGTCTAGCAG
CATTCCATCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46715.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis