Browse Element(s) Details


Os.46715.1.S1_x_at

Description gb:NM_195143.1
DB_XREF= gi:37531645
TID=Os.46715.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46715 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0051J07.15), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0980011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g333902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g316402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g212902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g180902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g185202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g585701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g247801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g169301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g256201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g233101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g295301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g152101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g181201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g484401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g168501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g384101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g223201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g011701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g201101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g265201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g147901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g383201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g219401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g393301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g238401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g321201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g115401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g014501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g252101/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os04g553201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g221001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g122101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g243001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g123701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g220301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g048301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g342601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g222201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g198301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g261801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g351401/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09750OsAffx.30361.1.S1_at10/1110+5041443..5042093hypothetical protein
LOC_Os10g09760OsAffx.18195.1.S1_at11/1110+5044197..5044844expressed protein
LOC_Os10g09770OsAffx.18196.1.S1_at11/1110+5052329..5052742hypothetical protein
LOC_Os10g09780OsAffx.20679.1.S1_at11/1110+5056051..5057154hypothetical protein
LOC_Os10g09780Os.25513.1.S1_at1/1110+5056051..5057154hypothetical protein
LOC_Os10g09790OsAffx.8429.1.S1_at10/1110+5060802..5063058expressed protein
LOC_Os10g09800Os.46715.1.S1_x_at11/1110+5066318..5068260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09800Os.46715.1.S1_at10/1110+5066318..5068260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09810OsAffx.361.1.S1_at11/1110+5068846..5075243retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09820OsAffx.30362.1.S1_at11/1110+5081067..5084708No apical meristem protein
LOC_Os10g09830NANA10+5086662..5087024hypothetical protein
LOC_Os10g09850Os.17419.1.S1_at11/1110+5091636..509604439 kDa EF-Hand containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46715.1.S1_x_at--429--4651Chr10:5066403..5066423 (21 bp)
GCGTCAACGCGTGGCAAGCGTTTGT
LOC_Os10g09800
Os.46715.1.S1_x_at--726--16312Chr10:5067805..5067826 (22 bp)
AGCGTTTGTTGCTTGTGGGTCAGTC
LOC_Os10g09800
Os.46715.1.S1_x_at--292--5611Chr10:5068005..5068029 (25 bp)
GACAAAGAATGATCCCCGTGACTCC
LOC_Os10g09800
Os.46715.1.S1_x_at--334--34735Chr12:2069801..2069820 (20 bp)
CAGTGGCAGCGAAGAGCAGACCGAT
LOC_Os12g04830
Os.46715.1.S1_x_at--941--5037Chr10:5068053..5068077 (25 bp)
GCAGACCGATGGAGCTCATATCAGT
LOC_Os10g09800
Os.46715.1.S1_x_at--1107--8071Chr10:5068063..5068087 (25 bp)
GGAGCTCATATCAGTGGTGTGTCTA
LOC_Os10g09800
Os.46715.1.S1_x_at--319--9651Chr10:5068073..5068097 (25 bp)
TCAGTGGTGTGTCTAGCAGCATTCC
LOC_Os10g09800
Os.46715.1.S1_x_at--960--8671Chr10:5068080..5068104 (25 bp)
TGTGTCTAGCAGCATTCCATCTCCA
LOC_Os10g09800
Os.46715.1.S1_x_at--479--4231Chr10:5068109..5068133 (25 bp)
CCGAGAACCCAACGGTCACTCATAT
LOC_Os10g09800
Os.46715.1.S1_x_at--986--9972Chr10:5068168..5068192 (25 bp)
TACCATCAGATGTTGCAGCAGGCAC
LOC_Os10g09800
Os.46715.1.S1_x_at--262--3491Chr10:5068186..5068210 (25 bp)
CAGGCACAGCAGAACCAGCAGTTTG
LOC_Os10g09800
Target Sequence 
GCGTCAACGCGTGGCAAGCGTTTGTTGCTTGTGGGTCAGTCGGCGGTCGATATCATGTGTTAGTGATGGTGAAGACAAAG
AATGATCCCCGTGACTCCAACGACGCCAGTGGCAGCGAAGAGCAGACCGATGGAGCTCATATCAGTGGTGTGTCTAGCAG
CATTCCATCTCCACCGCCCGAGAACCCAACGGTCACTCATATGATGACAATGATGATGCAACAGATGCAACAACATTACC
ATCAGATGTTGCAGCAGGCACAGCAGAACCAGCAGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46715.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis