Browse Element(s) Details


Os.46743.3.S1_a_at

Description gb:AY374515.1
DB_XREF= gi:36956979
GEN=MyoXIE1
TID=Os.46743.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46743 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) myosin heavy chain class XI E1 protein (MyoXIE1) mRNA, complete cds.
PROD=myosin heavy chain class XI E1 protein
FL= gb:AY374515.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5366011/11myosin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53600Os.6095.1.S1_at11/113+30686876..30690666HTH DNA-binding protein, putative, expressed
LOC_Os03g53610NANA3+30691265..30692175Seed maturation protein
LOC_Os03g53620Os.55399.1.S1_at11/113+30693515..30694380Seed maturation protein, expressed
LOC_Os03g53630Os.10544.1.S2_at11/113+30698003..30706129acetyltransferase, GNAT family protein, expressed
LOC_Os03g53630Os.10544.1.S1_at10/113+30698003..30706129acetyltransferase, GNAT family protein, expressed
LOC_Os03g53640Os.20176.1.S1_at11/113+30706199..30707865expressed protein
LOC_Os03g53650Os.7102.1.S1_at11/113+30710412..30714085Cysteine synthase, putative, expressed
LOC_Os03g53660Os.46743.3.S1_a_at11/113+30714994..30724355myosin family protein, putative, expressed
LOC_Os03g53670Os.9822.2.S1_a_at11/113+30728128..30732240YT521-B-like family protein, expressed
LOC_Os03g53680NANA3+30738028..30738258hypothetical protein
LOC_Os03g53690Os.55539.1.S1_at11/113+30738832..30739853NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g53700Os.14952.1.A1_at9/113+30742024..30747217PHD-finger family protein, expressed
LOC_Os03g53710Os.52647.1.S1_at11/113+30746891..30748683Aldose 1-epimerase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030048biological_processactin filament-based movement
GO:0005777cellular_componentperoxisome
GO:0016459cellular_componentmyosin
GO:0016461cellular_componentunconventional myosin
GO:0003774molecular_functionmotor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46743.3.S1_a_at--293--9931Chr03:30723610..30723634 (25 bp)
TACGGTGCACAAGGTCTATCTCAGG
LOC_Os03g53660
Os.46743.3.S1_a_at--418--5511Chr03:30723783..30723807 (25 bp)
GAACAATGGCCACTGATGACTCAAT
LOC_Os03g53660
Os.46743.3.S1_a_at--1146--3691Chr03:30723810..30723834 (25 bp)
CTACTCCAAATAGTTCGTTCTTGTT
LOC_Os03g53660
Os.46743.3.S1_a_at--515--6311Chr03:30723836..30723962 (25 bp)
GATGACGACTCAAGCATACCTATAT
LOC_Os03g53660
Os.46743.3.S1_a_at--1004--3331Chr03:30723978..30724002 (25 bp)
CACGACTGATGCTTGACATAGACCT
LOC_Os03g53660
Os.46743.3.S1_a_at--357--1371Chr03:30723997..30724021 (25 bp)
AGACCTATCTGACGTGGAACCAACA
LOC_Os03g53660
Os.46743.3.S1_a_at--1023--8171Chr03:30724012..30724036 (25 bp)
GGAACCAACACCACTGCTCAGGCAG
LOC_Os03g53660
Os.46743.3.S1_a_at--729--1431Chr03:30724035..30724059 (25 bp)
AGAACTCTCAGTTCCACTTTCTACT
LOC_Os03g53660
Os.46743.3.S1_a_at--962--2371Chr03:30724121..30724145 (25 bp)
AAACAGGTTCCGCTATTTTGTGAAG
LOC_Os03g53660
Os.46743.3.S1_a_at--539--4131Chr03:30724142..30724166 (25 bp)
GAAGTTCCTCGGTGGTGATTTCCCT
LOC_Os03g53660
Os.46743.3.S1_a_at--211--10351Chr03:30724254..30724278 (25 bp)
TTTACCATTCTTTTCATTTGTTCTG
LOC_Os03g53660
Target Sequence 
TACGGTGCACAAGGTCTATCTCAGGAGGTCATTGGAAAGATGAGAACAATGGCCACTGATGACTCAATAACTACTCCAAA
TAGTTCGTTCTTGTTAGATGACGACTCAAGCATACCTATATCGTTGGATGATATAGCACGACTGATGCTTGACATAGACC
TATCTGACGTGGAACCAACACCACTGCTCAGGCAGAACTCTCAGTTCCACTTTCTACTGCAGCACCACGCCACACAGACT
GATGGCATTGTTTGTTAATGCAAAGTTGAAAACATAATTAAACAGGTTCCGCTATTTTGTGAAGTTCCTCGGTGGTGATT
TCCCTTTTTTTTATGGGAGTGCAGGCTTGCCTTTTTTTTGTTGGCAATTTCAGGTGGGAGATTTTACAAGAAAGAAAAAT
ATAGAAGATTTTTTTACCATTCTTTTCATTTGTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46743.3.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis