Browse Element(s) Details


Os.4675.1.S1_at

Description gb:AK062957.1
DB_XREF= gi:32972975
TID=Os.4675.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4675 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023136B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-D02, full insert sequence.
FL= gb:AK062957.1 gb:AK099301.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g680305/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68000OsAffx.2431.1.S1_at11/111+39850487..39854076TERMINAL EAR1, putative, expressed
LOC_Os01g68010Os.7724.1.S1_at11/111+39865000..39867945TBC domain containing protein, expressed
LOC_Os01g68020Os.24338.1.A1_at11/111+39871084..39875470BTB/POZ domain containing protein, expressed
LOC_Os01g68020Os.11316.1.S1_at11/111+39871084..39875470BTB/POZ domain containing protein, expressed
LOC_Os01g68030Os.4675.1.S1_at5/111+39876192..39877575expressed protein
LOC_Os01g68040Os.26355.1.S1_at11/111+39878283..39882103CorA-like Mg2+ transporter protein, expressed
LOC_Os01g68050Os.8422.1.S1_at11/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68050Os.47836.1.A1_at4/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68060Os.11396.1.S1_at11/111+39892600..39896895Copine family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4675.1.S1_at--204--2891Chr01:39877545..39877569 (25 bp)
AAGGTGGCGACCTACTTCGCCATGA
LOC_Os01g68030
Os.4675.1.S1_at--853--10671Chr01:39877509..39877533 (25 bp)
TTCCTCTTCTGGCAGTCCATGGACA
LOC_Os01g68030
Os.4675.1.S1_at--1057--8511Chr01:39877490..39877514 (25 bp)
TGGACAGGGTCCACGTCTGGATCGC
LOC_Os01g68030
Os.4675.1.S1_at--903--9011Chr01:39876211..39876235 (25 bp)
TGCAAGCTGAGCTAATGGCCCAAGC
LOC_Os01g68030
Os.4675.1.S1_at--453--8471Chr01:39876196..39876220 (25 bp)
TGGCCCAAGCAAAGGAGAGTGAATC
LOC_Os01g68030
Os.4675.1.S1_at--74--831Chr01:39876154..39876178 (25 bp)
ATGGTTTTAGTAGTTGCTTTGTCAA
NONE
Os.4675.1.S1_at--1072--4871Chr01:39876139..39876163 (25 bp)
GCTTTGTCAAATTTCTTCCTTGGAA
NONE
Os.4675.1.S1_at--958--3011Chr01:39876097..39876121 (25 bp)
AATGCTTGGCTGATGTATTCTCCAC
NONE
Os.4675.1.S1_at--891--91Chr01:39876081..39876105 (25 bp)
ATTCTCCACAGCTCCAATAAACAAG
NONE
Os.4675.1.S1_at--618--3011Chr01:39876035..39876059 (25 bp)
AATGCAAGCGGCTAAGCTCATGATG
NONE
Os.4675.1.S1_at--163--4831Chr01:39876020..39876044 (25 bp)
GCTCATGATGAGTTATTTGCAGTTT
NONE
Target Sequence 
AAGGTGGCGACCTACTTCGCCATGACCTTCGGCGCGTTCCTCTTCTGGCAGTCCATGGACAGGGTCCACGTCTGGATCGC
CCTCCACCAGGACGAGAAGAAAGAGAGGATGGAAAGGGAACAGGAGATAAAGAGAATGCAAGCTGAGCTAATGGCCCAAG
CAAAGGAGAGTGAATCATGATTATCATTTGGCAATGGTTTTAGTAGTTGCTTTGTCAAATTTCTTCCTTGGAATGTACTT
TCCAAGTGATAATGCTTGGCTGATGTATTCTCCACAGCTCCAATAAACAAGAGATCTTATAACTTTTTGTCNAATGCAAG
CGGCTAAGCTCATGATGAGTTATTTGCAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis