Browse Element(s) Details


Os.4677.1.S1_a_at

Description gb:AB010740.1
DB_XREF= gi:3550984
TID=Os.4677.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4677 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for OsS5a, complete cds.
PROD=OsS5a
FL= gb:AB010740.1 gb:AB037151.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1397011/11Ubiquitin interaction motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13930OsAffx.3233.1.S1_at11/113+7538631..7540973subtilisin proteinase, putative, expressed
LOC_Os03g13940NANA3+7542916..7543564transposon protein, putative, unclassified
LOC_Os03g13950Os.12975.1.S1_at11/113+7544375..7546827Actin-depolymerizing factor, putative, expressed
LOC_Os03g13960Os.10924.1.S1_at10/113+7552393..7556481expressed protein
LOC_Os03g13970OsAffx.12848.1.S1_x_at11/113+7558499..7562799Ubiquitin interaction motif family protein, expressed
LOC_Os03g13970Os.4677.1.S1_a_at11/113+7558499..7562799Ubiquitin interaction motif family protein, expressed
LOC_Os03g13984OsAffx.3235.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g13984OsAffx.12849.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g14000Os.7524.1.S1_at11/113+7570923..7576500Acyl CoA binding protein, expressed
LOC_Os03g14010Os.8022.1.S1_at11/113+7578758..7582090Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g14020Os.20303.1.S1_s_at11/113+7582123..7586658expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0030163biological_processprotein catabolism
GO:0000502cellular_componentproteasome complex (sensu Eukaryota)
GO:0005634cellular_componentnucleus
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0001653molecular_functionpeptide receptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4677.1.S1_a_at--135--2271Chr03:7559097..7559121 (25 bp)
AAATCAACTCCTTTGTGTCTTCCTT
LOC_Os03g13970
Os.4677.1.S1_a_at--207--2651Chr03:7558699..7558723 (25 bp)
AACCACCTCTTGATCAATCTCGCAG
LOC_Os03g13970
Os.4677.1.S1_a_at--259--5011Chr03:7558678..7558702 (25 bp)
GCAGGCGCCCGAAGCATTGGAGATA
LOC_Os03g13970
Os.4677.1.S1_a_at--1102--4931Chr03:7558665..7558689 (25 bp)
GCATTGGAGATATCTGGTCTCGCTT
LOC_Os03g13970
Os.4677.1.S1_a_at--389--7811Chr03:7558650..7558674 (25 bp)
GGTCTCGCTTTATTTGGTCATGGAT
LOC_Os03g13970
Os.4677.1.S1_a_at--999--7811Chr03:7558635..7558659 (25 bp)
GGTCATGGATTCTACTTATCCTCGT
LOC_Os03g13970
Os.4677.1.S1_a_at--463--10431Chr03:7558620..7558644 (25 bp)
TTATCCTCGTGTAACTGTACTTCAA
LOC_Os03g13970
Os.4677.1.S1_a_at--473--10171Chr03:7558569..7558593 (25 bp)
TATCACTTCTTCTGTCGTCATTTTA
LOC_Os03g13970
Os.4677.1.S1_a_at--29--4011Chr03:7558554..7558578 (25 bp)
CGTCATTTTACGATTTGCAATTGTT
LOC_Os03g13970
Os.4677.1.S1_a_at--674--10731Chr03:7558540..7558564 (25 bp)
TTGCAATTGTTTACTGTCGTGGAAT
LOC_Os03g13970
Os.4677.1.S1_a_at--522--7171Chr03:7558525..7558549 (25 bp)
GTCGTGGAATTTACTTATTCGCTTC
LOC_Os03g13970
Target Sequence 
AAATCAACTCCTTTGTGTCTTCCTTGCAACCACCTCTTGATCAATCTCGCAGGCGCCCGAAGCATTGGAGATATCTGGTC
TCGCTTTATTTGGTCATGGATTCTACTTATCCTCGTGTAACTGTACTTCAATTAAAAAACTTAAAGGGATAATGGTTTAT
CACTTCTTCTGTCGTCATTTTACGATTTGCAATTGTTTACTGTCGTGGAATTTACTTATTCGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4677.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis