Browse Element(s) Details


Os.4678.1.S1_at

Description gb:AK058612.1
DB_XREF= gi:32968630
TID=Os.4678.1
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.4678 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071P12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-A11, full insert sequence.
FL= gb:AK058612.1 gb:AK101927.1 gb:AK058706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5999011/1160S ribosomal protein L24, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59940OsAffx.23862.1.S1_at11/111+34985578..34986219hypothetical protein
LOC_Os01g59950Os.48290.1.A1_at4/111+34990847..34991751expressed protein
LOC_Os01g59970Os.4633.1.S1_at5/111+35001691..35002854expressed protein
LOC_Os01g59980Os.13253.1.S1_at11/111+35004885..35009062Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os01g59990Os.4678.1.S1_at11/111+35009369..3501222660S ribosomal protein L24, putative, expressed
LOC_Os01g60000Os.18605.1.S1_s_at11/111+35012587..35016401pentatricopeptide, putative, expressed
LOC_Os01g60000OsAffx.23864.1.S1_at11/111+35012587..35016401pentatricopeptide, putative, expressed
LOC_Os01g60010OsAffx.23865.1.S1_at11/111+35016718..35018366pentatricopeptide, putative, expressed
LOC_Os01g60020Os.4384.1.S1_at11/111+35019726..35021240No apical meristem protein, expressed
LOC_Os01g60040Os.31272.1.S2_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.2.S1_x_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.1.S1_a_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.1.S2_a_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4678.1.S1_at--605--6611Chr01:35011363..35011387 (25 bp)
GTTGGTGCTACACTGGAAGTTATCC
LOC_Os01g59990
Os.4678.1.S1_at--916--7371Chr01:35011400..35011424 (25 bp)
GTGAGAAACCTGAAGTCCGTGATGC
LOC_Os01g59990
Os.4678.1.S1_at--41--5631Chr01:35011879..35011903 (25 bp)
GACACAGTCGAAGGGTGGTGCTACC
LOC_Os01g59990
Os.4678.1.S1_at--1019--9311Chr01:35011915..35011939 (25 bp)
TAAAGGTCCTAAGATTGGCGGCGGT
LOC_Os01g59990
Os.4678.1.S1_at--781--2671Chr01:35011946..35011970 (25 bp)
AAGCGCTGAAAGTCTCTTGCATCAT
LOC_Os01g59990
Os.4678.1.S1_at--288--9511Chr01:35011996..35012020 (25 bp)
TCTCTCCGGCCATATCGTAGAAACA
LOC_Os01g59990
Os.4678.1.S1_at--417--9951Chr01:35012022..35012046 (25 bp)
TACCTTGGTCAAGTTAGCCTGCCGT
LOC_Os01g59990
Os.4678.1.S1_at--678--10451Chr01:35012035..35012059 (25 bp)
TTAGCCTGCCGTCTTGAATTTTCAC
LOC_Os01g59990
Os.4678.1.S1_at--650--6311Chr01:35012072..35012096 (25 bp)
GATGACTTGTCCTGAATGCTTCGGG
LOC_Os01g59990
Os.4678.1.S1_at--657--631Chr01:35012087..35012111 (25 bp)
ATGCTTCGGGTATTTTGTTAGTCAA
LOC_Os01g59990
Os.4678.1.S1_at--1054--2231Chr01:35012115..35012139 (25 bp)
ACAATTGCACTTATGTTTGGCTATT
LOC_Os01g59990
Target Sequence 
GTTGGTGCTACACTGGAAGTTATCCAAAAGAAGAGGAGTGAGAAACCTGAAGTCCGTGATGCAGCCAGAGAAGCGGCTCT
CCGTGAGATCAAGGAGCGCATCAAGAAAACCAAGGATGAGAAAAAGGCAAAGAAGGCAGAGGTGGCAAAANTCTCAGAAG
ACACAGTCGAAGGGTGGTGCTACCCAGAGGGGTGCTAAAGGTCCTAAGATTGGCGGCGGTGGTGGGAAGCGCTGAAAGTC
TCTTGCATCATAGGGAGAGTTCTTCTGGCTTAGCCTTCTCTCCGGCCATATCGTAGAAACAGTACCTTGGTCAAGTTAGC
CTGCCGTCTTGAATTTTCACCTTTTTCTGTGAGATGACTTGTCCTGAATGCTTCGGGTATTTTGTTAGTCAATTTACAAT
TGCACTTATGTTTGGCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis