Browse Element(s) Details


Os.46782.1.S1_at

Description gb:AB071804.1
DB_XREF= gi:20975250
TID=Os.46782.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46782 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for transcription factor PCF3, partial cds
DEF=Oryza sativa (japonica cultivar-group) mRNA for transcription factor PCF3, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0746010/11TCP family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07420OsAffx.30862.1.S1_at11/1111+3729946..3731097hypothetical protein
LOC_Os11g07430Os.53470.1.S1_at11/1111+3733025..3734936expressed protein
LOC_Os11g07440Os.47344.1.A1_at11/1111+3735532..3739424Neutral/alkaline invertase, putative, expressed
LOC_Os11g07450Os.51933.1.S1_at11/1111+3745176..3751094Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g07450Os.33152.1.S1_x_at11/1111+3745176..3751094Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g07460Os.46782.1.S1_at10/1111+3754391..3757470TCP family transcription factor containing protein, expressed
LOC_Os11g07470Os.52668.1.S1_at11/1111+3778504..3784995expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46782.1.S1_at--514--1491Chr11:3755248..3755272 (25 bp)
AGCAGCTTTCCCACGGCGATGAACG
LOC_Os11g07460
Os.46782.1.S1_at--913--4611Chr11:3755047..3755071 (25 bp)
GCGAGCTCGCAGTGAGCTGAGCTAA
LOC_Os11g07460
Os.46782.1.S1_at--1120--4851Chr11:3755012..3755036 (25 bp)
GCTAGCTAAGCTGTGATGATGGGTT
LOC_Os11g07460
Os.46782.1.S1_at--256--6771Chr11:3754990..3755014 (25 bp)
GTTAATGGGAGGTAGCTGTGCAAAT
LOC_Os11g07460
Os.46782.1.S1_at--98--151Chr11:3754922..3754945 (24 bp)
ATTAGGGTGTTTGGAACTGCTTGCA
LOC_Os11g07460
Os.46782.1.S1_at--498--5071NONE
GCAGCTGCTCTCGTTAATTAATCAT
NONE
Os.46782.1.S1_at--533--811Chr11:3754858..3754882 (25 bp)
ATGGATTGTTTGCTTCTTTAGTTTA
LOC_Os11g07460
Os.46782.1.S1_at--239--1771Chr11:3754818..3754842 (25 bp)
ACCTGGGATTATTTTAGTTTGCTCT
LOC_Os11g07460
Os.46782.1.S1_at--245--10011Chr11:3754739..3754763 (25 bp)
TAGTGGGTCCAATTGGATCGATCTT
LOC_Os11g07460
Os.46782.1.S1_at--500--7971Chr11:3754725..3754749 (25 bp)
GGATCGATCTTGAGAAGCCTAGCTG
LOC_Os11g07460
Os.46782.1.S1_at--54--5411Chr11:3754712..3754736 (25 bp)
GAAGCCTAGCTGAGTGATTAATTTA
LOC_Os11g07460
Target Sequence 
AGCAGCTTTCCCACGGCGATGAACGTCACCATGGCGGACAACAACAACAGCAGCAACAACAACCTCGGCATGCTCGCCGC
GCTCAACGCCGGCGGCGGCGGCCGCTCCGGCGAGCACCAGCACCAGCATGAGGGGCAGTCGCCGGCGGAGATGGATCATC
AGCGCCGCGCCAACGGCGGCGGCGGCGAGGCTGGCGGCGCGGCGAGCTCGCAGTGAGCTGAGCTAAGCTAAGCTAAGCTA
GCTAAGCTGTGATGATGGGTTAATGGGAGGTAGCTGTGCAAATGCAAATGCAAATGGCATATGATGATTTGATTAGAGAG
AGTACAGATTAGGGTGTTTGGAACTGCTTGCAGCTGCTCTCGTTAATTAATCATCTCAATTCATCAATCAATGGATTGTT
TGCTTCTTTAGTTTACCCCCCTTATTTTTTACCTGGGATTATTTTAGTTTGCTCTTTTGGATTAATTAATTAATCAATGT
AAGGTGTTTGTGATGATGATGATGATTAGTAGTGGGTCCAATTGGATCGATCTTGAGAAGCCTAGCTGAGTGATTAATTT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46782.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis