Browse Element(s) Details


Os.46800.1.S2_a_at

Description gb:AK120876.1
DB_XREF= gi:37990499
TID=Os.46800.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46800 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (OSJNBa0006L06.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027F13, full insert sequence.
FL= gb:AK120876.1 gb:AK110897.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3304011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33020OsAffx.30648.1.S1_at11/1110+16961305..16962003hypothetical protein
LOC_Os10g33020OsAffx.14013.2.S1_at2/1110+16961305..16962003hypothetical protein
LOC_Os10g33030OsAffx.617.1.A1_at11/1110+16968971..16970268hypothetical protein
LOC_Os10g33030OsAffx.617.1.A1_x_at11/1110+16968971..16970268hypothetical protein
LOC_Os10g33040Os.46800.1.S1_a_at11/1110+16982871..16987487Leucine Rich Repeat family protein, expressed
LOC_Os10g33040Os.46800.1.S2_a_at11/1110+16982871..16987487Leucine Rich Repeat family protein, expressed
LOC_Os10g33050Os.56974.1.S1_at11/1110+16987465..16988532expressed protein
LOC_Os10g33060OsAffx.8033.1.S1_at11/1110+16990871..16992849Leucine Rich Repeat family protein
LOC_Os10g33070OsAffx.6844.1.S1_at11/1110+16995679..16996293hypothetical protein
LOC_Os10g33080OsAffx.20258.1.S1_at10/1110+17002072..17005527Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46800.1.S2_a_at--1123--6411Chr10:16986938..16986962 (25 bp)
GATCTACTGCTCAAGGACATACTAG
LOC_Os10g33040
Os.46800.1.S2_a_at--447--2931Chr10:16986950..16986974 (25 bp)
AAGGACATACTAGACCAGCGGCTGG
LOC_Os10g33040
Os.46800.1.S2_a_at--851--1711Chr10:16986963..16986987 (25 bp)
ACCAGCGGCTGGATGCTCCAACAGG
LOC_Os10g33040
Os.46800.1.S2_a_at--812--9211Chr10:16986979..16987003 (25 bp)
TCCAACAGGGCAGCTCGCAGAAGAG
LOC_Os10g33040
Os.46800.1.S2_a_at--683--5351Chr10:16986998..16987022 (25 bp)
GAAGAGGTCGTGTTCATCGTGAGAA
LOC_Os10g33040
Os.46800.1.S2_a_at--1088--7371Chr10:16987016..16987040 (25 bp)
GTGAGAATCGCGCTTGGTTGCACAA
LOC_Os10g33040
Os.46800.1.S2_a_at--932--1031Chr10:16987040..16987064 (25 bp)
AGGGTGAACCCTGAATCCAGGCCTT
LOC_Os10g33040
Os.46800.1.S2_a_at--203--891Chr10:16987058..16987082 (25 bp)
AGGCCTTCCATGAGATCTGTAGCGC
LOC_Os10g33040
Os.46800.1.S2_a_at--656--1251Chr10:16987086..16987110 (25 bp)
AGATTTCTGCGCATACTCAAGCCTA
LOC_Os10g33040
Os.46800.1.S2_a_at--692--2651Chr10:16987104..16987128 (25 bp)
AAGCCTACCTCTCTGAACCATTCAA
LOC_Os10g33040
Os.46800.1.S2_a_at--411--1491Chr10:16987142..16987166 (25 bp)
AGCAAGCTAACAGACTACCAGAAGT
LOC_Os10g33040
Target Sequence 
GATCTACTGCTCAAGGACATACTAGACCAGCGGCTGGATGCTCCAACAGGGCAGCTCGCAGAAGAGGTCGTGTTCATCGT
GAGAATCGCGCTTGGTTGCACAAGGGTGAACCCTGAATCCAGGCCTTCCATGAGATCTGTAGCGCAGGAGATTTCTGCGC
ATACTCAAGCCTACCTCTCTGAACCATTCAAACTGATCACAATTAGCAAGCTAACAGACTACCAGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46800.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis