Browse Element(s) Details


Os.46808.1.S1_at

Description gb:AK110666.1
DB_XREF= gi:32995875
TID=Os.46808.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46808 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0093B11.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-F08, full insert sequence.
FL= gb:AK110666.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1523011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15190OsAffx.17710.1.S1_at11/119+9219534..9220634hypothetical protein
LOC_Os09g15200OsAffx.17711.1.S1_at11/119+9227997..9230565hypothetical protein
LOC_Os09g15200OsAffx.14065.1.S1_at1/119+9227997..9230565hypothetical protein
LOC_Os09g15210OsAffx.6281.1.S1_at11/119+9232698..9233597hypothetical protein
LOC_Os09g15220Os.46012.2.S1_x_at10/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15220Os.27088.1.A1_x_at6/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15220Os.46012.3.S1_x_at6/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15220Os.54691.1.S1_x_at1/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15230Os.46808.1.S1_at11/119+9244914..9245867expressed protein
LOC_Os09g15230Os.46808.2.S1_x_at2/119+9244914..9245867expressed protein
LOC_Os09g15240OsAffx.17712.1.S1_at11/119+9250213..9254027Retinal pigment epithelial membrane protein, expressed
LOC_Os09g15250Os.50616.1.S2_x_at11/119+9263205..9268413retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15250Os.50616.1.S1_x_at11/119+9263205..9268413retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15250Os.50616.1.S2_at8/119+9263205..9268413retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46808.1.S1_at--993--7193Chr12:26232510..26232606 (25 bp)
GTCGATTTCGAGGTTTTTGTGATTC
NONE
Os.46808.1.S1_at--965--9851Chr09:9245343..9245367 (25 bp)
TACAGCTTCCTTCACATGCTTCATT
LOC_Os09g15230
Os.46808.1.S1_at--248--4911Chr09:9245360..9245384 (25 bp)
GCTTCATTCCGACGACTACAGCAAG
LOC_Os09g15230
Os.46808.1.S1_at--235--8291Chr09:9245463..9245487 (25 bp)
GGCTTCGACTTCTCGGGATAGCTAC
LOC_Os09g15230
Os.46808.1.S1_at--692--2571Chr09:9245497..9245521 (25 bp)
AACGGCAGTAGCTTCTCGAGACAGC
LOC_Os09g15230
Os.46808.1.S1_at--182--9051Chr09:9245588..9245612 (25 bp)
TGCAGCAGCTTTGTCTGGCGACGGC
LOC_Os09g15230
Os.46808.1.S1_at--765--1831Chr09:9245620..9245644 (25 bp)
ACGCGTGCAGTCGAATGGAATCCCC
LOC_Os09g15230
Os.46808.1.S1_at--16--2571Chr09:9245681..9245705 (25 bp)
AACTGAAATCGTGGATGCGCCCGGA
LOC_Os09g15230
Os.46808.1.S1_at--916--8091Chr09:9245703..9245727 (25 bp)
GGACCTTAGCCGACCAATTATCTAT
LOC_Os09g15230
Os.46808.1.S1_at--962--2035Chr09:9245767..9245791 (25 bp)
ACTTTCTACGAGCTCTCACGTTATA
LOC_Os09g15230
Os.46808.1.S1_at--130--4511Chr09:9245832..9245856 (25 bp)
GCCGTACATCTTATATCCAATCTGG
LOC_Os09g15230
Target Sequence 
GTCGATTTCGAGGTTTTTGTGATTCGATCCTACAGCTTCCTTCACATGCTTCATTCCGACGACTACAGCAAGGAAGCAAA
GCAGCAGGATGAAGGGATCTGGCGAAGGCAGATGATTCACATACAAAAATGATGGTGGCGAGATGGCGGCGGCTTCGACT
TCTCGGGATAGCTACAGCGAGAACAACGGCAGTAGCTTCTCGAGACAGCTGCGGCGGCTGCCCGCACGGCAACAACGCGG
CGGCGGCTGCTCGCGACGGCTGCGGCGACAACGCCTGCAGCAGCTTTGTCTGGCGACGGCTTCGTGCACGCGTGCAGTCG
AATGGAATCCCCTCGTTCTTCCTGCGTGGAAGACGGATTACAGTAGCAAACTGAAATCGTGGATGCGCCCGGACCTTAGC
CGACCAATTATCTATCTATCTATCGATCTATGCTTATACTTATACTAATTGGACACTTTCTACGAGCTCTCACGTTATAG
AAAAAACTATCCGTCTATTAAAGGAATCATGTAATCATAGCCGTACATCTTATATCCAATCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46808.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis