Browse Element(s) Details


Os.46833.1.S1_at

Description gb:AK108922.1
DB_XREF= gi:32994131
TID=Os.46833.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46833 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative disease resistance response protein (OSJNBb0058B20.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-H09, full insert sequence.
FL= gb:AK108922.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2587011/11Dirigent-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25810OsAffx.30532.1.S1_at4/1110+13045463..13046476expressed protein
LOC_Os10g25819OsAffx.8156.1.S1_at6/1110+13052446..13053554NA
LOC_Os10g25830OsAffx.30533.1.S1_s_at11/1110+13055911..13057374Mitochondrial carrier protein, expressed
LOC_Os10g25840NANA10+13059373..13060839retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g25850OsAffx.18402.1.S1_at11/1110+13061476..13070797CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os10g25850Os.22789.1.A1_at11/1110+13061476..13070797CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os10g25870Os.46833.1.S1_at11/1110+13071280..13072064Dirigent-like protein, expressed
LOC_Os10g25880NANA10+13081191..13084243hypothetical protein
LOC_Os10g25890Os.1709.1.S1_x_at6/1110+13085193..13089835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25900Os.46683.1.S1_at11/1110+13091589..13092225disease resistance response protein, putative, expressed
LOC_Os10g25910OsAffx.8153.1.S1_at11/1110+13096417..13098097transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46833.1.S1_at--89--2051Chr10:13071819..13071843 (25 bp)
ACTTCTTCTTCCACGAGGTGTTCAC
LOC_Os10g25870
Os.46833.1.S1_at--596--11Chr10:13071808..13071832 (25 bp)
CACGAGGTGTTCACGGCCGGCCCGA
LOC_Os10g25870
Os.46833.1.S1_at--767--4051Chr10:13071597..13071621 (25 bp)
CGATGCTGAGCCTGGCGTTCACGGA
LOC_Os10g25870
Os.46833.1.S1_at--202--3351Chr10:13071488..13071512 (25 bp)
CACGGGCAAGTTCCGGATGGCGCGG
LOC_Os10g25870
Os.46833.1.S1_at--448--7831Chr10:13071463..13071487 (25 bp)
GGTCACACGCTCAGCCGGCGCGTGA
LOC_Os10g25870
Os.46833.1.S1_at--108--9671Chr10:13071453..13071477 (25 bp)
TCAGCCGGCGCGTGAACTCGTCGGA
LOC_Os10g25870
Os.46833.1.S1_at--82--4651Chr10:13071444..13071468 (25 bp)
GCGTGAACTCGTCGGACCCCGACAA
LOC_Os10g25870
Os.46833.1.S1_at--61--10171Chr10:13071361..13071385 (25 bp)
TATAGCCTAGCTACCATGGATGGGT
LOC_Os10g25870
Os.46833.1.S1_at--1069--4331Chr10:13071348..13071372 (25 bp)
CCATGGATGGGTAGCTTTGATTTGT
LOC_Os10g25870
Os.46833.1.S1_at--272--10271Chr10:13071333..13071357 (25 bp)
TTTGATTTGTGATCGATCTTGTAAT
LOC_Os10g25870
Os.46833.1.S1_at--651--6391Chr10:13071323..13071347 (25 bp)
GATCGATCTTGTAATGTGGTTTTTT
LOC_Os10g25870
Target Sequence 
ACTTCTTCTTCCACGAGGTGTTCACGGCCGGCCCGAACGGCACGACGGCGACGGTTGCTCCGCCGGCGCGCAGCGGCGAC
GGGAGCTCCTTGGGGTTCGTCGGCGTGGTGGACGACATGCTCCGGGAGGGCGCGGACCCGGCGTCGCGCCTCGTGGGGCG
CGCGCAGGGGGTCACCGCCGGCACGTCGCTCGCCGCCGCCGACGGCGCGGGCGCGATCACGACGATGCTGAGCCTGGCGT
TCACGGAGGAGGGCCCGTACGCCGGGAGCACGCTGCAGGTGTTCGGCCGCGCGGTGCTGGGCACGGTGATGGAGCGGCCG
GTGGTGGGCGGCACGGGCAAGTTCCGGATGGCGCGGGGTCACACGCTCAGCCGGCGCGTGAACTCGTCGGACCCCGACAA
CCTCCTCGTCATCGAGTACGACGCCTACGTCACCACGTCTCCCNNTTAGCTAGCTAGCTATAGCCTAGCTACCATGGATG
GGTAGCTTTGATTTGTGATCGATCTTGTAATGTGGTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis