Browse Element(s) Details


OsAffx.8153.1.S1_at

Description gb:NM_196362.1
DB_XREF= gi:37534083
TID=OsAffx.8153.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBb0058B20.2), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2591011/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25870Os.46833.1.S1_at11/1110+13071280..13072064Dirigent-like protein, expressed
LOC_Os10g25880NANA10+13081191..13084243hypothetical protein
LOC_Os10g25890Os.1709.1.S1_x_at6/1110+13085193..13089835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25900Os.46683.1.S1_at11/1110+13091589..13092225disease resistance response protein, putative, expressed
LOC_Os10g25910OsAffx.8153.1.S1_at11/1110+13096417..13098097transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25920OsAffx.8152.1.S1_at11/1110+13100180..13101379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25930Os.46333.1.S1_at2/1110+13106703..13108209Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25930Os.46333.1.S1_x_at2/1110+13106703..13108209Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25940NANA10+13112221..13112758hypothetical protein
LOC_Os10g25950Os.46333.1.S1_x_at3/1110+13117793..13119521Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25950Os.46333.1.S1_at1/1110+13117793..13119521Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25960OsAffx.10637.1.S1_s_at11/1110+13120714..13124400transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25960OsAffx.10637.3.S1_s_at9/1110+13120714..13124400transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25960OsAffx.10637.4.S1_s_at7/1110+13120714..13124400transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8153.1.S1_at--991--391Chr10:13097223..13097247 (25 bp)
ATCAGAGCCTGCAACCCTAGAAGAT
LOC_Os10g25910
OsAffx.8153.1.S1_at--223--1751Chr10:13097138..13097162 (25 bp)
ACCTATCGTTTGGTGAATCACTCGA
LOC_Os10g25910
OsAffx.8153.1.S1_at--771--6211Chr10:13097097..13097121 (25 bp)
GAGGCTGGCAAATGGCCCAACTTGC
LOC_Os10g25910
OsAffx.8153.1.S1_at--759--2511Chr10:13097079..13097103 (25 bp)
AACTTGCCTCGTGACCTTATGGCAA
LOC_Os10g25910
OsAffx.8153.1.S1_at--621--1231Chr10:13096763..13096787 (25 bp)
AGTTCGTCGCCAGAAGGGAGCATGA
LOC_Os10g25910
OsAffx.8153.1.S1_at--367--691Chr10:13096742..13096766 (25 bp)
ATGACGAGCTTACCGCTGCTTTGGG
LOC_Os10g25910
OsAffx.8153.1.S1_at--27--2852Chr10:13096580..13096604 (25 bp)
AAGTCACCCAACAGTTCTACAGGCT
LOC_Os10g25910
OsAffx.8153.1.S1_at--351--311Chr10:13096528..13096552 (25 bp)
ATACTTAACACCTCAAGCCGAGCAG
LOC_Os10g25910
OsAffx.8153.1.S1_at--662--6371Chr10:13096495..13096519 (25 bp)
GATCCCAAGCAGTATCGGGTCCATA
LOC_Os10g25910
OsAffx.8153.1.S1_at--97--1411Chr10:13096471..13096495 (25 bp)
AGAAACAACATCCTACTCGGTCGAT
LOC_Os10g25910
OsAffx.8153.1.S1_at--638--7791Chr10:13096453..13096477 (25 bp)
GGTCGATCTTATTACCGGTCCGACA
LOC_Os10g25910
Target Sequence 
ATCAGAGCCTGCAACCCTAGAAGATCAGCAACTTGGATCTCAAAGGAACAGAAGCACAAATTCCCTGAATTGTTGAAGGA
TCAAAACCTATCGTTTGGTGAATCACTCGAGGAAAAAAACATTGCAGAGGCTGGCAAATGGCCCAACTTGCCTCGTGACC
TTATGGCAAGTATCGTCGAGAAGGAGAAGATAGGGGAGTTCGTCGCCAGAAGGGAGCATGACGAGCTTACCGCTGCTTTG
GGGACTGCGGAACACTCCGGGAGGGTAAGAGGAAAATCTTCAAGGACGAGTTGGAATGTCGGGTTTCCAAAGGAATCCAA
AAGTTACAAGAAGCGGGATACCTACAACACAAAGTTGCGTGAAAAAAAAGTCACCCAACAAGTCACCCAACAGTTCTACA
GGCTTGCCGCACAACATCCTCAAGCCTTTCCATACTTAACACCTCAAGCCGAGCAGACGGTGCAGATCCCAAGCAGTATC
GGGTCCATAGAAACAACATCCTACTCGGTCGATCTTATTACCGGTCCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis