Browse Element(s) Details


Os.46840.1.S1_at

Description gb:AK108465.1
DB_XREF= gi:32993674
TID=Os.46840.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46840 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cotton fiber expressed protein-like protein (OSJNBb0049A16.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-D12, full insert sequence.
FL= gb:AK108465.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3470011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34670Os.12086.1.S1_s_at11/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.32824.1.S1_at11/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.12086.1.S1_at10/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.45957.4.S1_x_at1/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670OsAffx.13530.1.S1_at1/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34680Os.53889.1.S1_at11/1110+18156871..18167124Vps52/Sac2 family protein, putative, expressed
LOC_Os10g34680Os.50591.1.S1_at1/1110+18156871..18167124Vps52/Sac2 family protein, putative, expressed
LOC_Os10g34690OsAffx.8001.1.S1_at10/1110+18168188..18169291NA
LOC_Os10g34694OsAffx.8001.1.S1_at1/1110+18169990..18170937hypothetical protein
LOC_Os10g34700Os.46840.1.S1_x_at11/1110+18175013..18176806expressed protein
LOC_Os10g34700Os.46840.1.S1_at11/1110+18175013..18176806expressed protein
LOC_Os10g34702NANA10+18179086..18180586hypothetical protein
LOC_Os10g34704NANA10+18194187..18194798hypothetical protein
LOC_Os10g34710Os.8368.1.S1_at11/1110+18201498..18210207Myosin head family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46840.1.S1_at--1146--5071Chr10:18176310..18176334 (25 bp)
GCACCAGGGACGTGCTCCCGGCGAT
LOC_Os10g34700
Os.46840.1.S1_at--227--991Chr10:18176409..18176433 (25 bp)
AGGAGTCCGAGCAGCGCCAGGCCCT
LOC_Os10g34700
Os.46840.1.S1_at--1107--3191Chr10:18176516..18176540 (25 bp)
CAAGGCGGTGTGTACAGCAGTAGTA
LOC_Os10g34700
Os.46840.1.S1_at--577--3391Chr10:18176530..18176554 (25 bp)
CAGCAGTAGTAAAAGCTTAGGCAGC
LOC_Os10g34700
Os.46840.1.S1_at--959--8851Chr10:18176591..18176615 (25 bp)
TGATGCACTGGCCACATAGACCTTG
LOC_Os10g34700
Os.46840.1.S1_at--354--8451Chr10:18176599..18176623 (25 bp)
TGGCCACATAGACCTTGATCCTCCA
LOC_Os10g34700
Os.46840.1.S1_at--32--4331Chr10:18176611..18176635 (25 bp)
CCTTGATCCTCCAATAATTATTAGT
LOC_Os10g34700
Os.46840.1.S1_at--97--6831Chr10:18176667..18176691 (25 bp)
GTTTAGATTTAGGTTTGATCTGCAT
LOC_Os10g34700
Os.46840.1.S1_at--591--7671Chr10:18176746..18176770 (25 bp)
GGGATTAATGTAACTCGATCTCTAT
LOC_Os10g34700
Os.46840.1.S1_at--1152--731Chr10:18176753..18176777 (25 bp)
ATGTAACTCGATCTCTATGAATGGA
LOC_Os10g34700
Os.46840.1.S1_at--989--6111Chr10:18176778..18176802 (25 bp)
GAGGTAATTAAGAGCACTTGTTTTT
LOC_Os10g34700
Target Sequence 
GCACCAGGGACGTGCTCCCGGCGATGCCCAACGACGAGCTGATGCGCCGCGCCGAGAGCCTCATCCGGCGCCACCACGAG
CAGCTGCGCCTGCAGCGGCAGGAGTCCGAGCAGCGCCAGGCCCTGGAGCTGCAGCGCCGCCGCCCGCTCATCCGCGTGTA
AGTCCGCCGCCGCCGCTCGCCGCCGGCGACGATGCATGCATGCATGCAAGGCGGTGTGTACAGCAGTAGTAAAAGCTTAG
GCAGCAGGGAGGACGTGGCCATGGTTGTGTGTGCAGCGGTTTGATGCACTGGCCACATAGACCTTGATCCTCCAATAATT
ATTAGTAGGTTAATTAGAGTAATTAGGCTTAAAAAAGGTTTAGATTTAGGTTTGATCTGCATGACTGCATGCAAGATTAT
GCTTGCATTTTGAGTGCCTTGATGATCTCTGCATAGGGGATTAATGTAACTCGATCTCTATGAATGGAGAGGTAATTAAG
AGCACTTGTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis