Browse Element(s) Details


Os.46842.1.S1_at

Description gb:AK108440.1
DB_XREF= gi:32993649
TID=Os.46842.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46842 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0006L06.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-B10, full insert sequence.
FL= gb:AK108440.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g329301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32890OsAffx.18496.1.S1_at11/1110+16883498..16884608hypothetical protein
LOC_Os10g32900Os.3195.2.S1_x_at11/1110+16892289..16895208CCT motif family protein, expressed
LOC_Os10g32900Os.52047.1.S1_x_at1/1110+16892289..16895208CCT motif family protein, expressed
LOC_Os10g32910OsAffx.18497.1.S1_at11/1110+16897157..16897627hypothetical protein
LOC_Os10g32920Os.3196.1.S1_at11/1110+16897967..1689997960S ribosomal protein L23, putative, expressed
LOC_Os10g32930OsAffx.30647.1.S1_x_at3/1110+16907347..16907616hypothetical protein
LOC_Os10g32930Os.46842.1.S1_at1/1110+16907347..16907616hypothetical protein
LOC_Os10g32940OsAffx.30647.1.S1_x_at11/1110+16914752..16915039expressed protein
LOC_Os10g32950OsAffx.20261.1.S1_at11/1110+16918861..16920479retrotransposon protein, putative, LINE subclass
LOC_Os10g32960Os.46065.1.S1_at11/1110+16921376..16926192Pex2/Pex12 amino terminal region family protein, expressed
LOC_Os10g32960Os.46065.2.S1_x_at9/1110+16921376..16926192Pex2/Pex12 amino terminal region family protein, expressed
LOC_Os10g32970Os.415.1.S1_at10/1110+16928803..16932188Eukaryotic translation initiation factor 4E-2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46842.1.S1_at--83--9051Chr10:16907552..16907576 (25 bp)
TGCAGAGCTACTCCCGCAACTTCGA
LOC_Os10g32930
Os.46842.1.S1_at--1116--10091Chr10:16907614..16907638 (25 bp)
TAGGCTCTCTAGCTAGGTAGCTCAT
NONE
Os.46842.1.S1_at--674--1551Chr10:16907624..16907648 (25 bp)
AGCTAGGTAGCTCATTCGGTTCGAT
NONE
Os.46842.1.S1_at--350--111Chr10:16907637..16907661 (25 bp)
ATTCGGTTCGATCCCGAGATCGCGC
NONE
Os.46842.1.S1_at--1013--3951Chr10:16907682..16907706 (25 bp)
CGGAGATTATTGTTCTGGTCTACCT
NONE
Os.46842.1.S1_at--376--10371Chr10:16907750..16907774 (25 bp)
TTTTTTCATAGTGCTCATCTGGGAT
NONE
Os.46842.1.S1_at--715--5531Chr10:16907790..16907814 (25 bp)
GAAACTACGATCCTAACACGCTCTT
NONE
Os.46842.1.S1_at--893--1831Chr10:16907807..16907831 (25 bp)
ACGCTCTTGTTCATGTATTGTGTAC
NONE
Os.46842.1.S1_at--1072--231Chr10:16907866..16907890 (25 bp)
ATATACGTACGTGACACATGAATAT
NONE
Os.46842.1.S1_at--879--3511Chr10:16907882..16907906 (25 bp)
CATGAATATATTCGGTTGCCATAAT
NONE
Os.46842.1.S1_at--469--7911Chr10:16907895..16907919 (25 bp)
GGTTGCCATAATAAGCCTGAAGCTG
NONE
Target Sequence 
TGCAGAGCTACTCCCGCAACTTCGACGACGGCGTCGGCCTCGTCGTCTCCGGCCACCGCTTCTAGGCTCTCTAGCTAGGT
AGCTCATTCGGTTCGATCCCGAGATCGCGCGCCCTGCCATTGCTGGAGACCGGAGATTATTGTTCTGGTCTACCTGCAAC
TCTGCAAGTGGTATTAGTGTTAGATTGTACTACTGTTTTTTTTTCATAGTGCTCATCTGGGATGGCAAAATTAATGGAGA
AACTACGATCCTAACACGCTCTTGTTCATGTATTGTGTACATATACTGTATGGACAGTATGGTATGGAATGTATATATAC
GTACGTGACACATGAATATATTCGGTTGCCATAATAAGCCTGAAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis