Browse Element(s) Details


Os.46855.1.S1_at

Description gb:AK107248.1
DB_XREF= gi:32992457
TID=Os.46855.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46855 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0093I09.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-F12, full insert sequence.
FL= gb:AK107248.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1793011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17880OsAffx.6686.1.S1_at9/1110+8707240..8709014hypothetical protein
LOC_Os10g17890OsAffx.30441.1.S1_at11/1110+8710622..8711533wall-associated kinase 3, putative
LOC_Os10g17900Os.9523.1.S1_at1/1110+8713170..8720349retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17910OsAffx.18277.1.S1_at11/1110+8724773..8726138Protein kinase domain containing protein
LOC_Os10g17920OsAffx.20540.1.S1_at11/1110+8728705..8730287retrotransposon protein, putative, unclassified, expressed
LOC_Os10g17930Os.46855.1.S1_at11/1110+8731422..8733068F-box domain containing protein, expressed
LOC_Os10g17940Os.46566.2.S1_x_at11/1110+8747152..8748591F-box domain containing protein
LOC_Os10g17950OsAffx.18278.1.S1_at11/1110+8756999..8763086Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46855.1.S1_at--441--1911Chr10:8731960..8731984 (25 bp)
ACTTGAGGACCTACAACCCGGTGAT
LOC_Os10g17930
Os.46855.1.S1_at--377--9851Chr10:8731949..8731973 (25 bp)
TACAACCCGGTGATCAACGTCTTCG
LOC_Os10g17930
Os.46855.1.S1_at--43--2591Chr10:8731934..8731958 (25 bp)
AACGTCTTCGCTCGCCATGACAGTG
LOC_Os10g17930
Os.46855.1.S1_at--1031--7511Chr10:8731850..8731874 (25 bp)
GTGGAGCTGAGCCACCTGATTCCAT
LOC_Os10g17930
Os.46855.1.S1_at--48--1771Chr10:8731837..8731861 (25 bp)
ACCTGATTCCATTGGCGAACGTGAA
LOC_Os10g17930
Os.46855.1.S1_at--308--751Chr10:8731748..8731772 (25 bp)
ATGTACGCCAAGAAACCGGACCTGG
LOC_Os10g17930
Os.46855.1.S1_at--178--3991Chr10:8731642..8731666 (25 bp)
CGTGGAGCTTCTTCGGGTACGAGTT
LOC_Os10g17930
Os.46855.1.S1_at--1122--7531Chr10:8731585..8731609 (25 bp)
GTGGCGATTCCACCGCTAGATGATG
LOC_Os10g17930
Os.46855.1.S1_at--1109--1531Chr10:8731555..8731579 (25 bp)
AGCATCCATCTCTGCACTGAGGTAA
LOC_Os10g17930
Os.46855.1.S1_at--836--171Chr10:8731510..8731534 (25 bp)
ATTTTACTGTTGTCACCTGCTGAAG
LOC_Os10g17930
Os.46855.1.S1_at--227--5651Chr10:8731486..8731510 (25 bp)
GACAGCACTGTAGCTCGTCGGAAAA
LOC_Os10g17930
Target Sequence 
ACTTGAGGACCTACAACCCGGTGATCAACGTCTTCGCTCGCCATGACAGTGGCGGCTGCAATGGGAGCACGGCGCAGAAG
ATCAGGTGGAAGGTGGAGGAGGNGCACGACGTGGAGCTGAGCCACCTGATTCCATTGGCGAACGTGAAGAGGGTTTNGTC
TGAGGGGCGTCTGCGAGAAGAGCGGGCTCATCTTCCTCGCCATCGGCGCAGACATGTACGCCAAGAAACCGGACCTGGCG
CTGTACGCGCTGGACATGGAGAAGAAGGAGGCGAGGCTGGTGCCGGCGCCCCCGGGCCGCTGCTGCGTTCGCCGGTCGTC
GTGGAGCTTCTTCGGGTACGAGTTGGACCGTGTGGACTACCTCGCCTCCCTCGCCGGTGGCGATTCCACCGCTAGATGAT
GGAACAAGCATCCATCTCTGCACTGAGGTAAGGAGAAGAAATTTGGGTCAGATTTTACTGTTGTCACCTGCTGAAGACAG
CACTGTAGCTCGTCGGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis