Browse Element(s) Details


Os.46873.1.S1_a_at

Description gb:AK069758.1
DB_XREF= gi:32979782
TID=Os.46873.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46873 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0087H07.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023033H12, full insert sequence.
FL= gb:AK069758.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0470011/11F-box domain containing protein, expressed
LOC_Os10g046902/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04640OsAffx.20761.1.S1_at11/1110+2199524..2203866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04660OsAffx.30279.1.A1_at11/1110+2204917..2209015hypothetical protein
LOC_Os10g04660OsAffx.6575.1.S1_at11/1110+2204917..2209015hypothetical protein
LOC_Os10g04660OsAffx.21673.1.S1_x_at2/1110+2204917..2209015hypothetical protein
LOC_Os10g04674Os.46731.1.S1_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04674Os.46731.1.S1_x_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04674Os.46731.2.S1_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04690Os.46873.1.S1_a_at2/1110+2223366..2224991hypothetical protein
LOC_Os10g04700Os.46873.1.S1_a_at11/1110+2227150..2230121F-box domain containing protein, expressed
LOC_Os10g04710OsAffx.18134.1.S1_at11/1110+2232038..2232672hypothetical protein
LOC_Os10g04720Os.23264.1.A1_at10/1110+2233528..2236379Protein kinase domain containing protein, expressed
LOC_Os10g04730Os.46730.1.S1_at11/1110+2241638..2246767Protein kinase domain containing protein, expressed
LOC_Os10g04740Os.46012.2.S1_x_at8/1110+2250119..2255384retrotransposon protein, putative, unclassified
LOC_Os10g04740Os.27088.1.A1_x_at6/1110+2250119..2255384retrotransposon protein, putative, unclassified
LOC_Os10g04740Os.46012.3.S1_x_at4/1110+2250119..2255384retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46873.1.S1_a_at--819--3612Chr10:2229043..2229067 (25 bp)
CTTGGGCTGAGTTCTGCTGTGCAGA
LOC_Os10g04700
Os.46873.1.S1_a_at--88--6011Chr10:2229018..2229042 (25 bp)
GAGAGAAAACAGATATCGTGGGATA
LOC_Os10g04700
Os.46873.1.S1_a_at--67--511Chr10:2229004..2229028 (25 bp)
ATCGTGGGATATTCCGAGGATCCTA
LOC_Os10g04700
Os.46873.1.S1_a_at--348--9291Chr10:2228992..2229016 (25 bp)
TCCGAGGATCCTAATGCGTTTATTT
LOC_Os10g04700
Os.46873.1.S1_a_at--1069--592Chr10:2228979..2229003 (25 bp)
ATGCGTTTATTTTAGTGGTGGATAC
LOC_Os10g04700
Os.46873.1.S1_a_at--207--7731Chr10:2228963..2228987 (25 bp)
GGTGGATACGGATTTCTACATGTTC
LOC_Os10g04700
Os.46873.1.S1_a_at--750--6531Chr10:2228953..2228977 (25 bp)
GATTTCTACATGTTCCGAGTTGACT
LOC_Os10g04700
Os.46873.1.S1_a_at--163--10671Chr10:2228941..2228965 (25 bp)
TTCCGAGTTGACTCAATGCAGTCCA
LOC_Os10g04700
Os.46873.1.S1_a_at--642--2991Chr10:2228927..2228951 (25 bp)
AATGCAGTCCAAGAAACTTTTTGAT
LOC_Os10g04700
Os.46873.1.S1_a_at--162--10391Chr10:2228909..2228933 (25 bp)
TTTTGATTGCAATGTCGTCACCCGC
LOC_Os10g04700
Os.46873.1.S1_a_at--1098--10731Chr10:2228903..2228927 (25 bp)
TTGCAATGTCGTCACCCGCTGTCAT
LOC_Os10g04700
Target Sequence 
CTTGGGCTGAGTTCTGCTGTGCAGAGAGAGAAAACAGATATCGTGGGATATTCCGAGGATCCTAATGCGTTTATTTTAGT
GGTGGATACGGATTTCTACATGTTCCGAGTTGACTCAATGCAGTCCAAGAAACTTTTTGATTGCAATGTCGTCACCCGCT
GTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46873.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis