Browse Element(s) Details


Os.46885.2.S1_at

Description gb:NM_196091.1
DB_XREF= gi:37533541
TID=Os.46885.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46885 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (OSJNBa0083M08.8), mRNA.
PROD=putative glutathione S-transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2231010/11glutathione transferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22240NANA10+11178521..11181474retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22250OsAffx.22722.1.S1_x_at1/1110+11181967..11184492retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22260OsAffx.20440.1.S1_at11/1110+11186035..11188953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22260OsAffx.20440.1.S1_x_at11/1110+11186035..11188953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22260OsAffx.20440.2.S1_x_at3/1110+11186035..11188953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22270OsAffx.18344.1.S1_at11/1110+11191642..11191958hypothetical protein
LOC_Os10g22290OsAffx.30497.1.S1_at10/1110+11194428..11196644hypothetical protein
LOC_Os10g22290Os.41248.5.S1_x_at5/1110+11194428..11196644hypothetical protein
LOC_Os10g22290Os.41248.2.A1_at2/1110+11194428..11196644hypothetical protein
LOC_Os10g22300OsAffx.20439.1.S1_at11/1110+11197659..11204011NB-ARC domain containing protein, expressed
LOC_Os10g22310Os.46885.2.S1_x_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.1.S1_x_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.1.S1_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.2.S1_at10/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22320NANA10+11208808..11209218hypothetical protein
LOC_Os10g22330Os.7061.1.S1_at10/1110+11211712..11214648Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
LOC_Os10g22340OsAffx.228.1.S1_at10/1110+11217009..11218485transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g22350OsAffx.30498.1.S1_at11/1110+11223878..11229788hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46885.2.S1_at--874--9871NONE
TACATCGATGACAAGGCTATGTGCC
NONE
Os.46885.2.S1_at--180--9391Chr10:11206501..11206915 (25 bp)
TCGATGACAAGGCTATGTGCCCTTT
LOC_Os10g22310
Os.46885.2.S1_at--853--651Chr10:11206504..11206918 (25 bp)
ATGACAAGGCTATGTGCCCTTTCGC
LOC_Os10g22310
Os.46885.2.S1_at--151--5611Chr10:11206900..11206920 (21 bp)
GACAAGGCTATGTGCCCTTTCGCAA
LOC_Os10g22310
Os.46885.2.S1_at--588--2211Chr10:11206900..11206921 (22 bp)
ACAAGGCTATGTGCCCTTTCGCAAT
LOC_Os10g22310
Os.46885.2.S1_at--864--911Chr10:11206900..11206924 (25 bp)
AGGCTATGTGCCCTTTCGCAATCAC
LOC_Os10g22310
Os.46885.2.S1_at--935--10111Chr10:11206904..11206928 (25 bp)
TATGTGCCCTTTCGCAATCACTCAT
LOC_Os10g22310
Os.46885.2.S1_at--400--9171Chr10:11206908..11206932 (25 bp)
TGCCCTTTCGCAATCACTCATGCGA
LOC_Os10g22310
Os.46885.2.S1_at--730--5191Chr10:11206917..11206941 (25 bp)
GCAATCACTCATGCGATGGCTGACA
LOC_Os10g22310
Os.46885.2.S1_at--986--3071Chr10:11206919..11206943 (25 bp)
AATCACTCATGCGATGGCTGACAAT
LOC_Os10g22310
Os.46885.2.S1_at--765--371Chr10:11206920..11206944 (25 bp)
ATCACTCATGCGATGGCTGACAATG
LOC_Os10g22310
Target Sequence 
TACATCGATGACAAGGCTATGTGCCCTTTCGCAATCACTCATGCGATGGCTGACAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46885.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis