Browse Element(s) Details


Os.4690.1.S1_at

Description gb:AK071037.1
DB_XREF= gi:32981060
TID=Os.4690.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4690 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023079A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079A13, full insert sequence.
FL= gb:AK071037.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2179811/1140S ribosomal protein S3a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21770OsAffx.10496.1.S1_at1/1112+12244529..12247245retrotransposon protein, putative, unclassified
LOC_Os12g21780OsAffx.22368.1.S1_x_at1/1112+12247748..12253875retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g21789OsAffx.31826.1.S1_x_at11/1112+12262068..12264856glycosyl hydrolase family protein 43, putative, expressed
LOC_Os12g21789Os.23678.1.A1_at11/1112+12262068..12264856glycosyl hydrolase family protein 43, putative, expressed
LOC_Os12g21798Os.4690.1.S1_at11/1112+12267896..1227170540S ribosomal protein S3a, putative, expressed
LOC_Os12g21810OsAffx.7651.1.S1_at11/1112+12273945..12275854hypothetical protein
LOC_Os12g21810Os.50737.1.S1_at1/1112+12273945..12275854hypothetical protein
LOC_Os12g21820OsAffx.19542.3.S1_x_at7/1112+12279169..12284086retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g21830NANA12+12285139..12290198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g21840NANA12+12296279..12296542hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4690.1.S1_at--41--10071Chr12:12268141..12268165 (25 bp)
TAGGACAGGAGGTCACTGCCGAGTA
LOC_Os12g21798
Os.4690.1.S1_at--1106--7091Chr12:12268130..12268154 (25 bp)
GTCACTGCCGAGTAGATTTTCACTT
LOC_Os12g21798
Os.4690.1.S1_at--173--6551Chr12:12268116..12268140 (25 bp)
GATTTTCACTTATTTTACTGCTATT
LOC_Os12g21798
Os.4690.1.S1_at--791--10191Chr12:12268079..12268103 (25 bp)
TATATATATGTATCGCCTATCAAGG
LOC_Os12g21798
Os.4690.1.S1_at--1084--1011Chr12:12268057..12268081 (25 bp)
AGGTTTTGATCACGAGCAGCAGGCT
LOC_Os12g21798
Os.4690.1.S1_at--246--3411Chr12:12268041..12268065 (25 bp)
CAGCAGGCTCGGTTTTTGTGGCTAA
LOC_Os12g21798
Os.4690.1.S1_at--473--4491Chr12:12268035..12268059 (25 bp)
GCTCGGTTTTTGTGGCTAATTTCCT
LOC_Os12g21798
Os.4690.1.S1_at--911--8311Chr12:12268022..12268046 (25 bp)
GGCTAATTTCCTGAATACTTTCTTG
LOC_Os12g21798
Os.4690.1.S1_at--283--2051Chr12:12268006..12268030 (25 bp)
ACTTTCTTGAGATTACTAGCCAGCA
LOC_Os12g21798
Os.4690.1.S1_at--979--3711Chr12:12267991..12268015 (25 bp)
CTAGCCAGCATCGTTTTTGTTTTCT
LOC_Os12g21798
Os.4690.1.S1_at--510--211Chr12:12267954..12267978 (25 bp)
ATTTGTCTAAAGTTTGTGCTTTCTT
LOC_Os12g21798
Target Sequence 
TAGGACAGGAGGTCACTGCCGAGTAGATTTTCACTTATTTTACTGCTATTTTATTCAGACAATATATATATGTATCGCCT
ATCAAGGTTTTGATCACGAGCAGCAGGCTCGGTTTTTGTGGCTAATTTCCTGAATACTTTCTTGAGATTACTAGCCAGCA
TCGTTTTTGTTTTCTGGATGGAAGTTTATTTGTCTAAAGTTTGTGCTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4690.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis