Browse Element(s) Details


Os.4694.1.S1_at

Description gb:AF372833.1
DB_XREF= gi:13991928
TID=Os.4694.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4694 (NCBI UniGene Cluster)
DEF=Oryza sativa phosphoenolpyruvatephosphate translocator mRNA, complete cds.
PROD=phosphoenolpyruvatephosphate translocator
FL= gb:AF372833.1 gb:AK071036.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1260011/11Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12560OsAffx.6254.1.S1_at11/119+7197633..7203748Ferrochelatase II, chloroplast precursor, putative, expressed
LOC_Os09g12560Os.9742.1.S1_at11/119+7197633..7203748Ferrochelatase II, chloroplast precursor, putative, expressed
LOC_Os09g12570Os.5312.1.S1_at11/119+7204143..7207198Ubiquitin-conjugating enzyme spm2, putative, expressed
LOC_Os09g12580NANA9+7215986..7216375hypothetical protein
LOC_Os09g12590NANA9+7217962..7219515Sugar transporter family protein, expressed
LOC_Os09g12600Os.4694.1.S1_at11/119+7221188..7224657Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os09g12610OsAffx.29820.1.S1_at11/119+7225823..7226459hypothetical protein
LOC_Os09g12620Os.52109.1.S1_at11/119+7230651..7231571expressed protein
LOC_Os09g12630Os.55367.1.S1_at10/119+7232384..7233198expressed protein
LOC_Os09g12640OsAffx.6256.1.S1_at11/119+7234109..7234508hypothetical protein
LOC_Os09g12650OsAffx.6257.1.S1_at11/119+7239336..7243604Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative
LOC_Os09g12660Os.3122.1.S1_at11/119+7244359..7248813Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015712biological_processhexose phosphate transport
GO:0015717biological_processtriose phosphate transport
GO:0009528cellular_componentplastid inner membrane
GO:0005355molecular_functionglucose transporter activity
GO:0009670molecular_functiontriose-phosphate transporter activity
GO:0015152molecular_functionglucose-6-phosphate transporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4694.1.S1_at--1088--9031Chr09:7222036..7222145 (25 bp)
TGCAGTCTGCTGGTCTGAACTTAAA
LOC_Os09g12600
Os.4694.1.S1_at--78--2231Chr09:7222001..7222025 (25 bp)
ACAAGGTCACTGATTGCTGCGTTCT
LOC_Os09g12600
Os.4694.1.S1_at--1010--7731Chr09:7221786..7221810 (25 bp)
GGTGTCGTACATGATCCTGGCAAGA
LOC_Os09g12600
Os.4694.1.S1_at--748--9891Chr09:7221750..7221774 (25 bp)
TACTCACTCGGTGGGTAACTGTGTC
LOC_Os09g12600
Os.4694.1.S1_at--302--8591Chr09:7221715..7221739 (25 bp)
TGGTCATTGTGACATCCGTTCTGTT
LOC_Os09g12600
Os.4694.1.S1_at--959--8771Chr09:7221679..7221702 (24 bp)
TGTTTCGCCTATCAACTCTCTGGGA
LOC_Os09g12600
Os.4694.1.S1_at--292--1991Chr09:7221504..7221528 (25 bp)
ACTGCCTGATTGTGTCTTGGTATCT
LOC_Os09g12600
Os.4694.1.S1_at--678--5371Chr09:7221474..7221498 (25 bp)
GAAGAACCGTAGAAGCATTGCCACA
LOC_Os09g12600
Os.4694.1.S1_at--917--71Chr09:7221458..7221482 (25 bp)
ATTGCCACACGCCATCGGAATGAGT
LOC_Os09g12600
Os.4694.1.S1_at--117--6111Chr09:7221437..7221461 (25 bp)
GAGTGCCTTAGCTTAGAATGATCCT
LOC_Os09g12600
Os.4694.1.S1_at--363--7131Chr09:7221324..7221348 (25 bp)
GTCTTCTTTACCACCTTATGCTTGA
LOC_Os09g12600
Target Sequence 
TGCAGTCTGCTGGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTTTCCATGCATACCAACAG
GTGTCGTACATGATCCTGGCAAGAGTGTCCCCTGTTACTCACTCGGTGGGTAACTGTGTCAAGCGAGTGGTGGTCATTGT
GACATCCGTTCTGTTCTTCCGCACCCCTGTTTCGCCTATCAACTCTCTGGGAACCGGAGTCGCTCTTGCCGGAGTTTTCC
TGTACTCACAATTGAAGCGGCTTAAACCCAAGCCCAAGACTGCCTGATTGTGTCTTGGTATCTATCGTGAAGAACCGTAG
AAGCATTGCCACACGCCATCGGAATGAGTGCCTTAGCTTAGAATGATCCTTGGAGAAGCTCCATCCAGTGAACTGATGCT
GCTGTGTGTATCGTTTGTAGTTGAGTTACTAGCGTGCTAATCGTGGCAAGGTTTTTGTGTCTTCTTTACCACCTTATGCT
TGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis