Browse Element(s) Details


Os.46941.1.S1_s_at

Description gb:AK100361.1
DB_XREF= gi:32985570
TID=Os.46941.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46941 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083M02, full insert sequence.
FL= gb:AK100361.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4850011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48450NANA6+29313793..29316301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48460NANA6+29317879..29320819retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48470NANA6+29321136..29327225retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48480NANA6+29327608..29328060retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48490Os.40855.2.S1_x_at10/116+29333887..29336235hypothetical protein
LOC_Os06g48490Os.40855.4.S1_x_at4/116+29333887..29336235hypothetical protein
LOC_Os06g48490Os.40855.4.S1_at1/116+29333887..29336235hypothetical protein
LOC_Os06g48500Os.46941.1.S1_s_at11/116+29340928..29342969expressed protein
LOC_Os06g48500Os.28181.1.A1_at11/116+29340928..29342969expressed protein
LOC_Os06g48510Os.27712.2.S1_x_at11/116+29346849..29351121choline monooxygenase, chloroplast precursor, putative, expressed
LOC_Os06g48510Os.27712.1.S1_at11/116+29346849..29351121choline monooxygenase, chloroplast precursor, putative, expressed
LOC_Os06g48520NANA6+29351932..29355138NB-ARC domain containing protein
LOC_Os06g48530Os.38989.1.S1_at11/116+29356541..29363557C2H2 zinc-finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46941.1.S1_s_at--1024--711Chr06:29342300..29342324 (25 bp)
ATGGATCCCTTTTGTAATAGTTTGG
LOC_Os06g48500
Os.46941.1.S1_s_at--88--10451Chr06:29342365..29342389 (25 bp)
TTAGTGCTTAGGTTTCTTGATTTCT
LOC_Os06g48500
Os.46941.1.S1_s_at--566--3651Chr06:29342391..29342415 (25 bp)
CTTCTCTTATATTAGCTGCATGCCA
LOC_Os06g48500
Os.46941.1.S1_s_at--9--4991Chr06:29342408..29342432 (25 bp)
GCATGCCAATCCTACCTATGAACAA
LOC_Os06g48500
Os.46941.1.S1_s_at--886--251Chr06:29342549..29342573 (25 bp)
ATATGCCATGTATGTATCCTACTAA
LOC_Os06g48500
Os.46941.1.S1_s_at--569--2031Chr06:29342580..29342604 (25 bp)
ACTAGCTAGTGCCTTTGATCTCATT
LOC_Os06g48500
Os.46941.1.S1_s_at--1019--10251Chr06:29342593..29342617 (25 bp)
TTTGATCTCATTGGGCTAACCTTCA
LOC_Os06g48500
Os.46941.1.S1_s_at--9--491Chr06:29342705..29342729 (25 bp)
ATCTGTTCTTTGCACTTATCTCATC
LOC_Os06g48500
Os.46941.1.S1_s_at--1094--6771Chr06:29342774..29342798 (25 bp)
GTTAGGGACCAACAACCACACTTGT
LOC_Os06g48500
Os.46941.1.S1_s_at--1116--2171Chr06:29342791..29342815 (25 bp)
ACACTTGTAACCACCTTGTGTGCAT
LOC_Os06g48500
Os.46941.1.S1_s_at--788--10831Chr06:29342806..29342830 (25 bp)
TTGTGTGCATCCATCCATGAATGAA
LOC_Os06g48500
Target Sequence 
ATGGATCCCTTTTGTAATAGTTTGGGATCTCATCTCATCAAATCAACCATCAAAAATACCTTATATTAGTGCTTAGGTTT
CTTGATTTCTTCTTCTCTTATATTAGCTGCATGCCAATCCTACCTATGAACAAACTCANTGTTAATTAGTTGCATAATTG
CATTGACCAAGAGATGAGAGCATCATATCATGCACCAAATACACTTATGGAGAACTCCTATTGAACAATGTTTAATTCTT
GGTGCATATATATGCCATGTATGTATCCTACTAATTCCTAACTAGCTAGTGCCTTTGATCTCATTGGGCTAACCTTCAAT
TTTGTTCAATAGCAATAACCTTCTGTCAATATAGCTGCAGGAGGCATGCAGAGATGAATTAATCAAGACCCAATTAGTCA
TCCCAATCTGTTCTTTGCACTTATCTCATCTGCATAATGCATATGCAATTGTTTCATGTATATAAGTACTCCTAGTTAGG
GACCAACAACCACACTTGTAACCACCTTGTGTGCATCCATCCATGAATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46941.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis