Browse Element(s) Details


Os.4714.1.S1_at

Description gb:AK063806.1
DB_XREF= gi:32973824
TID=Os.4714.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4714 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 60S ribosomal protein (P0585H11.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-G03, full insert sequence.
FL= gb:AK063806.1 gb:AK103048.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0187011/1160S ribosomal protein L13a-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01840Os.20517.1.S1_at11/117+494780..497280expressed protein
LOC_Os07g01850Os.21876.1.S1_at11/117+504590..509557NLI interacting factor-like phosphatase family protein, expressed
LOC_Os07g01850OsAffx.5177.1.S1_at8/117+504590..509557NLI interacting factor-like phosphatase family protein, expressed
LOC_Os07g01860Os.38052.1.S1_at11/117+514165..520238expressed protein
LOC_Os07g01870Os.4714.1.S1_at11/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01870Os.4714.2.S1_x_at10/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01870Os.4714.2.S1_at7/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01880Os.36267.1.S2_s_at11/117+524570..532642Leo1, expressed
LOC_Os07g01880Os.36267.1.S1_s_at10/117+524570..532642Leo1, expressed
LOC_Os07g01880Os.11217.1.S1_at1/117+524570..532642Leo1, expressed
LOC_Os07g01890Os.23660.1.S1_at11/117+533901..536093expressed protein
LOC_Os07g01890Os.23660.1.S2_at11/117+533901..536093expressed protein
LOC_Os07g01900Os.44557.1.S1_at11/117+536280..538081expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4714.1.S1_at--96--3571Chr07:522181..522205 (25 bp)
CATCAATTTTCTTTTCGCCTTTATA
LOC_Os07g01870
Os.4714.1.S1_at--895--3111Chr07:522157..522181 (25 bp)
AATATTTCTGCTTATCGGTACCATG
LOC_Os07g01870
Os.4714.1.S1_at--479--4931Chr07:522063..522087 (25 bp)
GCTTGATCTGATTTTCCCTCTTGAA
LOC_Os07g01870
Os.4714.1.S1_at--801--9711Chr07:522035..522059 (25 bp)
TCAACCTTGAACTCTCCTAACTGGA
LOC_Os07g01870
Os.4714.1.S1_at--187--9811Chr07:522018..522042 (25 bp)
TAACTGGACAAATGACCCCTCTGGT
LOC_Os07g01870
Os.4714.1.S1_at--10--6731Chr07:521991..522015 (25 bp)
GTTCTGGGTTATTTTGATCCTACTT
LOC_Os07g01870
Os.4714.1.S1_at--815--3031Chr07:521955..521979 (25 bp)
AATTTGGCCTGTGATTTTTACCCTG
LOC_Os07g01870
Os.4714.1.S1_at--790--151Chr07:521884..521908 (25 bp)
ATTATGCTCGGCTAGGTTCCTTCTA
LOC_Os07g01870
Os.4714.1.S1_at--427--191Chr07:521820..521844 (25 bp)
ATTTCTTCCTTTCTATTCACCAATT
LOC_Os07g01870
Os.4714.1.S1_at--115--6991Chr07:521795..521819 (25 bp)
GTACCGTGTAATTAGCTCTGTTGTG
LOC_Os07g01870
Os.4714.1.S1_at--694--6491Chr07:521717..521741 (25 bp)
GATAGAATCAATACTCCTCCTGAAT
LOC_Os07g01870
Target Sequence 
CATCAATTTTCTTTTCGCCTTTATAATATTTCTGCTTATCGGTACCATGAGAAGTGAAATGATATGTCTGTCGAAACATG
ATAATTTTGTTCCAATTGAATACTAGAGAGTTATATTGGCTTGATCTGATTTTCCCTCTTGAATTTTCAACCTTGAACTC
TCCTAACTGGACAAATGACCCCTCTGGTTTGTTCTGGGTTATTTTGATCCTACTTAACGAGGGAGTAATTTGGCCTGTGA
TTTTTACCCTGTGGTTCGGAACTAATTTTCTCATTCTTTGCAATGATGTCTGTTAATATTATGCTCGGCTAGGTTCCTTC
TACTACGTTTTATCCCCTAGCCCTAGCACCTTCGCTTGCTCATTTCTTCCTTTCTATTCACCAATTGTACCGTGTAATTA
GCTCTGTTGTGTATTTTTTTAAAATTGTTTGTGCAGAACACCAGATTATAGACTGTATAATATAGATAGAATCAATACTC
CTCCTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4714.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis