Browse Element(s) Details


Os.4719.1.S1_at

Description gb:AK104873.1
DB_XREF= gi:32990082
TID=Os.4719.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4719 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-044-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-C04, full insert sequence.
FL= gb:AK069711.1 gb:AK104873.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4543011/11LEM3 family/CDC50 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45390OsAffx.15936.1.S1_at10/116+27440488..27443852expressed protein
LOC_Os06g45399NANA6+27445969..27446559NA
LOC_Os06g45410Os.50003.1.S1_at11/116+27455060..27458560myb family transcription factor-related protein, putative, expressed
LOC_Os06g45420OsAffx.15937.1.S1_at11/116+27461108..27462017hypothetical protein
LOC_Os06g45430Os.4719.1.S1_at11/116+27465368..27468861LEM3 family/CDC50 family protein, expressed
LOC_Os06g45440Os.17920.1.S1_at11/116+27468979..27470808haloacid dehalogenase-like hydrolase family protein, expressed
LOC_Os06g45450OsAffx.28117.1.S1_at11/116+27472218..27473452hypothetical protein
LOC_Os06g45460OsAffx.5114.1.S1_at11/116+27479085..27480390F-box domain containing protein
LOC_Os06g45470OsAffx.5115.1.S1_at11/116+27492243..27492452hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4719.1.S1_at--700--2431Chr06:27467761..27467785 (25 bp)
AAAAGCTGGTCCTTTCTACTGCAAC
LOC_Os06g45430
Os.4719.1.S1_at--289--3731Chr06:27467776..27467800 (25 bp)
CTACTGCAACCTGGCTTGGTGGGAA
LOC_Os06g45430
Os.4719.1.S1_at--122--10391Chr06:27467848..27467872 (25 bp)
TTTTCTTGGCATTTGCTTTCACCTT
LOC_Os06g45430
Os.4719.1.S1_at--1015--3671Chr06:27467863..27467887 (25 bp)
CTTTCACCTTGCTATACCTCATAAA
LOC_Os06g45430
Os.4719.1.S1_at--763--7711Chr06:27468440..27468464 (25 bp)
GGGTGATCACAACTACTTGTCCTGG
LOC_Os06g45430
Os.4719.1.S1_at--227--8171Chr06:27468463..27468487 (25 bp)
GGAACAGACATCCTGGAGGCCGTTA
LOC_Os06g45430
Os.4719.1.S1_at--814--2751Chr06:27468487..27468511 (25 bp)
AAGACGTCCAAAACACTTGTCGCAT
LOC_Os06g45430
Os.4719.1.S1_at--40--8331Chr06:27468518..27468542 (25 bp)
GGCTCATCCGGTGACATGTATCATG
LOC_Os06g45430
Os.4719.1.S1_at--455--7871Chr06:27468593..27468617 (25 bp)
GGTTTGACCTAGACCTTCATGTACA
LOC_Os06g45430
Os.4719.1.S1_at--53--10611Chr06:27468736..27468760 (25 bp)
TTCTGAATGCCTAAACCGTTCTGTT
LOC_Os06g45430
Os.4719.1.S1_at--781--2871Chr06:27468769..27468793 (25 bp)
AAGTGGTTCATTCATCATGCTGATA
LOC_Os06g45430
Target Sequence 
AAAAGCTGGTCCTTTCTACTGCAACCTGGCTTGGTGGGAAGAATGATTTTCTAGGATTTGCGTATGTTATAGTCGGAGGG
GTCTGCTTTTTCTTGGCATTTGCTTTCACCTTGCTATACCTCATAAAACCAAGGAAATTGGGTGATCACAACTACTTGTC
CTGGAACAGACATCCTGGAGGCCGTTAAGACGTCCAAAACACTTGTCGCATAAAAATGGCTCATCCGGTGACATGTATCA
TGTACTTAATGATGATATACTGAAAATTGTCAGGGAGTGTAATCAGGTCTTTGGTTTGACCTAGACCTTCATGTACATCT
TAGCATAAGAACCACGCTGTTTTGTTTCATTGTTTCTTTTGTTATTTCGGAACTGCATATAGCAGTGATGAATAGAATCG
GTACTGATTGTTTTGTGATGAATAGAATCCTATCATTCTGAATGCCTAAACCGTTCTGTTATTGGCTTAAGTGGTTCATT
CATCATGCTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4719.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis