Browse Element(s) Details


Os.4720.1.S1_at

Description gb:CB966781
DB_XREF= gi:30228890
DB_XREF=NL42_D09
CLONE=NL42_D09
TID=Os.4720.1
CNT=15
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.4720 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_177217.1 (A.thaliana) 60S ribosomal protein L27A (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4217011/1160S ribosomal protein L27a-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42130OsAffx.28868.1.S1_at11/117+25209576..25210261hypothetical protein
LOC_Os07g42140Os.50176.1.S1_at11/117+25212849..25214925hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g42150OsAffx.28869.1.S1_at11/117+25217814..25221358Transcription initiation factor IID, 31kD subunit family protein
LOC_Os07g42160Os.12326.1.S1_s_at11/117+25224167..25227685RelA/SpoT containing protein, expressed
LOC_Os07g42170Os.4720.1.S1_at11/117+25234988..2523575060S ribosomal protein L27a-2, putative, expressed
LOC_Os07g42180Os.23210.1.S1_at11/117+25238070..25246771PAUSED, putative, expressed
LOC_Os07g42190OsAffx.5606.1.S1_at11/117+25249332..25251771hypothetical protein
LOC_Os07g42200Os.53190.1.S1_at11/117+25253371..25258266Protein kinase APK1B, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4720.1.S1_at--633--9451Chr07:25235444..25235468 (25 bp)
TCTGGTCGATGGTGCCCGCCGAGCA
LOC_Os07g42170
Os.4720.1.S1_at--1131--7291Chr07:25235250..25235274 (25 bp)
GTGCTCACCGCCTAGGGTTTGGTCC
LOC_Os07g42170
Os.4720.1.S1_at--1133--10071Chr07:25235238..25235262 (25 bp)
TAGGGTTTGGTCCTGGCCCTGCCTT
LOC_Os07g42170
Os.4720.1.S1_at--160--4531Chr07:25235223..25235247 (25 bp)
GCCCTGCCTTTTGTTCTGCTTCTTG
LOC_Os07g42170
Os.4720.1.S1_at--338--4911Chr07:25235206..25235230 (25 bp)
GCTTCTTGGTTTTTGAGATCTATTA
LOC_Os07g42170
Os.4720.1.S1_at--857--6931Chr07:25235174..25235198 (25 bp)
GTAGTAGTCGTTTCTTGTCTCAAGC
LOC_Os07g42170
Os.4720.1.S1_at--897--9571Chr07:25235162..25235186 (25 bp)
TCTTGTCTCAAGCTATTTGCGTTAA
LOC_Os07g42170
Os.4720.1.S1_at--108--5691Chr07:25235134..25235158 (25 bp)
GACTTGATTAGTTTGTTTTCTACTG
LOC_Os07g42170
Os.4720.1.S1_at--544--6811Chr07:25235120..25235144 (25 bp)
GTTTTCTACTGTACTTCTTGCATGT
LOC_Os07g42170
Os.4720.1.S1_at--1020--5211Chr07:25235077..25235101 (25 bp)
GAATTTTTGCACTAAGCGATGCCAG
LOC_Os07g42170
Os.4720.1.S1_at--1004--9791Chr07:25235065..25235089 (25 bp)
TAAGCGATGCCAGTTCATGTCAGAT
LOC_Os07g42170
Target Sequence 
TCTGGTCGATGGTGCCCGCCGAGCAGGCGGCGGAGGCCGCNGGCGCCGGCAAGGNCGCCCNTGCTGNACGTGACGCAGTT
NGGNCTACTTCAAGGTGCTCGGGAAGGGTCTGCTGCCGGAGAAGCCCATCGTCGTCAAGGCCAAGCTCATCTCCAAGGTC
GCCGAGAAGAAGATCAAGGCCGCCGGCGGCGCCGTCGTGCTCACCGCCTAGGGTTTGGTCCTGGCCCTGCCTTTTGTTCT
GCTTCTTGGTTTTTGAGATCTATTAATCTGAAGTAGTAGTCGTTTCTTGTCTCAAGCTATTTGCGTTAAGAAGACTTGAT
TAGTTTGTTTTCTACTGTACTTCTTGCATGTTAAGACAGTACGTTATGAGAATTTTTGCACTAAGCGATGCCAGTTCATG
TCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4720.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis