Browse Element(s) Details


Os.47317.1.S1_at

Description gb:AK109490.1
DB_XREF= gi:32994699
TID=Os.47317.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-C08, full insert sequence.
FL= gb:AK109490.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5232011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52270Os.3437.1.S1_at11/114+30844804..30849804coatomer epsilon subunit, putative, expressed
LOC_Os04g52280Os.32904.1.S1_at11/114+30850553..30854787mannitol dehydrogenase, putative, expressed
LOC_Os04g52290Os.4898.1.S1_at11/114+30854574..30857262pentatricopeptide, putative, expressed
LOC_Os04g52300Os.9807.1.S1_at11/114+30857445..30858798expressed protein
LOC_Os04g52310Os.18572.1.S1_at11/114+30859134..30861473ZIP zinc/iron transport family protein, expressed
LOC_Os04g52320Os.47317.1.S1_at11/114+30870200..30873541expressed protein
LOC_Os04g52330Os.17679.1.S1_at11/114+30876737..30878634expressed protein
LOC_Os04g52340Os.31773.2.S1_x_at10/114+30879851..30883952Cell differentiation protein rcd1, putative, expressed
LOC_Os04g52340Os.31773.2.S1_at10/114+30879851..30883952Cell differentiation protein rcd1, putative, expressed
LOC_Os04g52354Os.12042.1.S1_at11/114+30884213..3088884240S ribosomal protein S11, putative, expressed
LOC_Os04g52370Os.6313.1.S1_at11/114+30889854..30894370UDP-N-acetylglucosamine pyrophosphorylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009556biological_processmicrosporogenesis
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47317.1.S1_at--198--3751Chr04:30873026..30873050 (25 bp)
CTCAAGGCCGTCAATGGCGTGGCGA
LOC_Os04g52320
Os.47317.1.S1_at--241--9111Chr04:30873252..30873276 (25 bp)
TGCTGTTCCCGGACCGGATCGGGCA
LOC_Os04g52320
Os.47317.1.S1_at--875--7951Chr04:30873267..30873291 (25 bp)
GGATCGGGCACGTGCAGTACTCGCT
LOC_Os04g52320
Os.47317.1.S1_at--812--4011Chr04:30873394..30873418 (25 bp)
CGTCGACCAGAACAGCAGCTGAAGA
LOC_Os04g52320
Os.47317.1.S1_at--911--3272Chr04:30873420..30873444 (25 bp)
CAAAAAATCAAAATGCTGCTGCTGC
LOC_Os04g52320
Os.47317.1.S1_at--634--4471Chr04:30873443..30873467 (25 bp)
GCCTGCCGCGATTGCGCGCGAGCAA
LOC_Os04g52320
Os.47317.1.S1_at--278--4611Chr04:30873460..30873484 (25 bp)
GCGAGCAAGGCGTTAGATTCGTTTG
LOC_Os04g52320
Os.47317.1.S1_at--1076--6571Chr04:30873475..30873499 (25 bp)
GATTCGTTTGTTCTTGCGATTCACC
LOC_Os04g52320
Os.47317.1.S1_at--140--10251Chr04:30873481..30873505 (25 bp)
TTTGTTCTTGCGATTCACCGGCAAA
LOC_Os04g52320
Os.47317.1.S1_at--179--6571Chr04:30873492..30873516 (25 bp)
GATTCACCGGCAAAATTCGTCTATA
LOC_Os04g52320
Os.47317.1.S1_at--109--111Chr04:30873506..30873530 (25 bp)
ATTCGTCTATATCAGAGAGATGGCA
LOC_Os04g52320
Target Sequence 
CTCAAGGCCGTCAATGGCGTGGCGAGGGGGGTGCAGATCGTCGGCAACCTGTTCAACGGGAGGGGGAAGGGGGTGGACAT
CGTGGAGCTCGACGGCGAGTTCGCGACGGTGGAGCAGGTGTACGTGGCGCAGAACGCGGCGACGGGGATGACGGTGAGGT
CGACGACGGCGCGCGCCGCGGCGGAGGGGAACGGGAGCTCGTGGACGGTGGACTTCTCGCCGGTGCTGCTGTTCCCGGAC
CGGATCGGGCACGTGCAGTACTCGCTCGCCGCCGGCGACGCGTTCCCGGGCCACGCTCTCCGGAACGTCTCCGGCAACCG
CGTCGTCATCGCCACCGACGCCGCCGTGTCCGCCACCGTGCACGTGCTCGTCGACCAGAACAGCAGCTGAAGAACAAAAA
ATCAAAATGCTGCTGCTGCCTGCCGCGATTGCGCGCGAGCAAGGCGTTAGATTCGTTTGTTCTTGCGATTCACCGGCAAA
ATTCGTCTATATCAGAGAGATGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis