Browse Element(s) Details


Os.47349.1.S1_at

Description gb:AK068822.1
DB_XREF= gi:32978847
TID=Os.47349.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47349 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013168H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013168H14, full insert sequence.
FL= gb:AK068822.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g044009/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04320Os.53344.1.S1_at10/113+1969707..1975130hypothetical protein
LOC_Os03g04330OsAffx.24961.1.S1_at11/113+1976054..1976536hypothetical protein
LOC_Os03g04340Os.6433.1.S1_at11/113+1982232..198409524-methylenesterol C-methyltransferase 2, putative, expressed
LOC_Os03g04350OsAffx.24962.1.S1_at11/113+1987355..1987722hypothetical protein
LOC_Os03g04350Os.25910.1.S1_s_at1/113+1987355..1987722hypothetical protein
LOC_Os03g04350OsAffx.16321.1.S1_x_at1/113+1987355..1987722hypothetical protein
LOC_Os03g04360Os.50503.1.S1_at11/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360Os.50503.1.S2_at11/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360OsAffx.20487.1.S1_s_at3/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360OsAffx.11592.1.S1_x_at2/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04370Os.55093.1.S1_at11/113+1993159..1993854expressed protein
LOC_Os03g04380Os.51396.1.S1_at11/113+1994068..1994713Complex 1 protein containing protein, expressed
LOC_Os03g04390Os.49142.1.S1_at11/113+1994759..1997434pentatricopeptide, putative, expressed
LOC_Os03g04400Os.47349.1.S1_at9/113+1997847..2001075DnaJ domain containing protein, expressed
LOC_Os03g04410Os.7192.1.S1_at11/113+2005928..2012682Aconitate hydratase, cytoplasmic, putative, expressed
LOC_Os03g04420OsAffx.12731.1.S1_at11/113+2020097..2021140hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47349.1.S1_at--153--3411Chr03:1999612..1999636 (25 bp)
CAGCAATTGTTGTCATGGCTTCCAA
LOC_Os03g04400
Os.47349.1.S1_at--751--8291NONE
GGCTTCCAAGGAGGCTGCACTATCA
NONE
Os.47349.1.S1_at--210--7451Chr03:1998544..1998568 (25 bp)
GTGTACAATGTTTTCTCTGTCCCAT
LOC_Os03g04400
Os.47349.1.S1_at--650--8811Chr03:1998515..1998539 (25 bp)
TGTTGCTCCTGTTCAAGAATCGGGT
LOC_Os03g04400
Os.47349.1.S1_at--38--8611Chr03:1998491..1998515 (25 bp)
TGGTGTTCCAACAAGGTCAACTCAT
LOC_Os03g04400
Os.47349.1.S1_at--885--71Chr03:1998145..1998428 (25 bp)
ATTCCGTAAACTTCAAGAGGCTCAG
LOC_Os03g04400
Os.47349.1.S1_at--41--10451Chr03:1998099..1998123 (25 bp)
TTAGGCGTTTAGTTGAAGCGTCAGC
LOC_Os03g04400
Os.47349.1.S1_at--558--6651Chr03:1997988..1998012 (25 bp)
GTTGATAATCTTTCTCATGCGGATG
LOC_Os03g04400
Os.47349.1.S1_at--435--3531Chr03:1997973..1997997 (25 bp)
CATGCGGATGGTGATGCCAGTTTTC
LOC_Os03g04400
Os.47349.1.S1_at--462--6791Chr03:1997954..1997978 (25 bp)
GTTTTCAGGCATTCACTACCATGTA
LOC_Os03g04400
Os.47349.1.S1_at--746--6931Chr03:1997847..1997871 (25 bp)
GTAGGTTTATCTTGTGCGATTCTCC
NONE
Target Sequence 
CAGCAATTGTTGTCATGGCTTCCAAGGAGGCTGCACTATCAGCATTACAAAACCATTCTGTGTACAATGTTTTCTCTGTC
CCATTGATTGTTGCTCCTGTTCAAGAATCGGGTGGTGTTCCAACAAGGTCAACTCATACACCTGAAACGAGGCCAAGCAA
CNTTGGTGGAACTGGATTCAATGATTTGGAAGCATCAGTATTCCGTAAACTTCAAGAGGCTCAGAAAAGGAAGCAAAGCG
GCTAGTTAGGCGTTTAGTTGAAGCGTCAGCAGGACGTTTCCTGCTNAAGAACAACTGAGAATAGCTGGGAGACTTACGTC
AGAAATTTGAACAATTTTGTAGTTGGGGGCGATCTTGTTGATAATCTTTCTCATGCGGATGGTGATGCCAGTTTTCAGGC
ATTCACTACCATGTATGTTGTTCCAATAGACTATAACGTCAGATNTTTAACTGTATACTTCAATATTTGGTTTGGGATAA
AAGTGATATACAAACATGTAGGTTTATCTTGTGCGATTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis