Browse Element(s) Details


Os.47380.1.S1_at

Description gb:AY466109.1
DB_XREF= gi:39748093
GEN=LTP2
TID=Os.47380.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47380 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) lipid transfer protein-like protein (LTP2) mRNA, complete cds.
PROD=lipid transfer protein-like protein
FL= gb:AY466109.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4681011/11Cortical cell delineating protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46750Os.17642.1.S1_a_at11/114+27501008..27506010Glycogenin, putative, expressed
LOC_Os04g46760OsAffx.26489.1.S1_at11/114+27507233..27509399trehalose-phosphatase family protein
LOC_Os04g46770OsAffx.8513.1.S1_s_at1/114+27511493..27511961transposon protein, putative, unclassified
LOC_Os04g46770OsAffx.10756.1.S1_x_at1/114+27511493..27511961transposon protein, putative, unclassified
LOC_Os04g46780Os.52343.1.S1_at11/114+27513652..27516700MSP domain containing protein, expressed
LOC_Os04g46780Os.51114.1.S1_x_at9/114+27513652..27516700MSP domain containing protein, expressed
LOC_Os04g46790OsAffx.26490.1.S1_at11/114+27517388..27518059hypothetical protein
LOC_Os04g46800NANA4+27519131..27519412hypothetical protein
LOC_Os04g46810Os.47380.1.S1_at11/114+27520967..27521716Cortical cell delineating protein precursor, putative, expressed
LOC_Os04g46820NANA4+27524246..27524641Cortical cell delineating protein precursor, putative
LOC_Os04g46830OsAffx.26492.1.S1_at11/114+27534287..27535141Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g46830OsAffx.26492.1.S1_s_at11/114+27534287..27535141Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g46840OsAffx.4109.1.S1_at11/114+27536212..27537433hypothetical protein
LOC_Os04g46850OsAffx.26493.1.S1_at11/114+27540099..27540606hypothetical protein
LOC_Os04g46860Os.20826.1.S1_at11/114+27545574..27548230GRAS family transcription factor containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47380.1.S1_at--685--631Chr04:27521432..27521456 (25 bp)
ATGCTAAGCATCGATAGGCGGCGGC
LOC_Os04g46810
Os.47380.1.S1_at--472--4951Chr04:27521465..27521489 (25 bp)
GCATTTGTTCCGCTGGCTATTTTAT
LOC_Os04g46810
Os.47380.1.S1_at--209--4131Chr04:27521475..27521499 (25 bp)
CGCTGGCTATTTTATCTGGACTGTT
LOC_Os04g46810
Os.47380.1.S1_at--802--5711Chr04:27521493..27521517 (25 bp)
GACTGTTTGATTGCTACTACGTGCT
LOC_Os04g46810
Os.47380.1.S1_at--184--4851Chr04:27521515..27521539 (25 bp)
GCTAGCTTAGCTTGCAACATTTGCG
LOC_Os04g46810
Os.47380.1.S1_at--93--2091Chr04:27521531..27521555 (25 bp)
ACATTTGCGCGCATGCATGGATCGA
LOC_Os04g46810
Os.47380.1.S1_at--487--4051Chr04:27521553..27521577 (25 bp)
CGATCGACAAATATGCATGCGTGCA
LOC_Os04g46810
Os.47380.1.S1_at--800--651Chr04:27521592..27521616 (25 bp)
ATGCACACGTACCATGGAGCTACTC
LOC_Os04g46810
Os.47380.1.S1_at--591--4831Chr04:27521610..27521634 (25 bp)
GCTACTCGATTTTCCGTGTTTTTAT
LOC_Os04g46810
Os.47380.1.S1_at--640--10371Chr04:27521631..27521655 (25 bp)
TTATTCGTTTCATGTGTGGGTCCTT
LOC_Os04g46810
Os.47380.1.S1_at--469--8671Chr04:27521645..27521669 (25 bp)
TGTGGGTCCTTGTATGATCTGTTGA
LOC_Os04g46810
Target Sequence 
ATGCTAAGCATCGATAGGCGGCGGCGCTNCTGCGCATTTGTTCCGCTGGCTATTTTATCTGGACTGTTTGATTGCTACTA
CGTGCTAGCTTAGCTTGCAACATTTGCGCGCATGCATGGATCGATCGACAAATATGCATGCGTGCACCNGCAAATTAAGC
ATGCACACGTACCATGGAGCTACTCGATTTTCCGTGTTTTTATTCGTTTCATGTGTGGGTCCTTGTATGATCTGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47380.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis