Browse Element(s) Details


Os.47398.2.A1_at

Description gb:AK073456.1
DB_XREF= gi:32983479
TID=Os.47398.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47398 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042O07, full insert sequence.
FL= gb:AK073456.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4614011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46100OsAffx.24747.1.S1_at11/112+28091110..28092152Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g46110OsAffx.4509.1.S1_s_at8/112+28099353..28101044hypothetical protein
LOC_Os02g46110OsAffx.24748.1.S1_at3/112+28099353..28101044hypothetical protein
LOC_Os02g46110OsAffx.4509.1.S1_x_at1/112+28099353..28101044hypothetical protein
LOC_Os02g46120Os.52348.1.S1_at10/112+28102765..28107558regulatory protein, putative, expressed
LOC_Os02g46130Os.12716.1.S1_a_at11/112+28107762..28113117Aspartyl-tRNA synthetase, putative, expressed
LOC_Os02g46140Os.47398.2.A1_at11/112+28116496..28118283expressed protein
LOC_Os02g46150Os.47398.1.S1_at11/112+28117822..28122244Uncharacterised protein family containing protein, expressed
LOC_Os02g46159NANA2+28123823..28124520NA
LOC_Os02g46170OsAffx.25885.1.S1_at1/112+28127354..28128414hypothetical protein
LOC_Os02g46180Os.53154.1.S1_at11/112+28130478..28131590expressed protein
LOC_Os02g46190OsAffx.2977.1.S1_at11/112+28138319..28138792senescence-associated protein, putative
LOC_Os02g46200OsAffx.8908.1.S1_at7/112+28141085..28145322transposon protein, putative, Mutator sub-class
LOC_Os02g46200OsAffx.8908.1.S1_x_at5/112+28141085..28145322transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47398.2.A1_at--783--291Chr02:28117427..28117451 (25 bp)
ATAGCAAGGACGCTCCTGCGCAGAG
LOC_Os02g46140
Os.47398.2.A1_at--878--491Chr02:28117481..28117505 (25 bp)
ATCGGATCTTGTTCTTCCTTGGAGA
LOC_Os02g46140
Os.47398.2.A1_at--929--10671Chr02:28117495..28117519 (25 bp)
TTCCTTGGAGACCTGGAGGCTGCAT
LOC_Os02g46140
Os.47398.2.A1_at--203--8331Chr02:28117512..28117536 (25 bp)
GGCTGCATGCGCAGATGCCAAACGT
LOC_Os02g46140
Os.47398.2.A1_at--30--9151Chr02:28117544..28117568 (25 bp)
TGCGACGACCGTGATATCCAGGAAC
LOC_Os02g46140
Os.47398.2.A1_at--583--10371Chr02:28117645..28117669 (25 bp)
TTATCCGTAGCGTTTCACATTCATC
LOC_Os02g46140
Os.47398.2.A1_at--85--7031Chr02:28117704..28117728 (25 bp)
GTAAATCTGCGCTAATCGCCTTTTA
LOC_Os02g46140
Os.47398.2.A1_at--690--2711Chr02:28117746..28117770 (25 bp)
AAGCACGTGTAGCATCATCTGGTAA
LOC_Os02g46140
Os.47398.2.A1_at--367--3531Chr02:28117761..28117785 (25 bp)
CATCTGGTAATTTTTCCGCCGTAAG
LOC_Os02g46140
Os.47398.2.A1_at--214--7251Chr02:28117844..28117868 (25 bp)
GTCCCATCATCTTTTCTAATCTTTA
LOC_Os02g46140
Os.47398.2.A1_at--838--9811Chr02:28117901..28117925 (25 bp)
TAAAAAGGCAACTGGCCTCTCCTGT
LOC_Os02g46140
Target Sequence 
ATAGCAAGGACGCTCCTGCGCAGAGTAGCGAGGACGAGCAGCGGCAGATATCCGATCGGATCTTGTTCTTCCTTGGAGAC
CTGGAGGCTGCATGCGCAGATGCCAAACGTGTGAAGGTGCGACGACCGTGATATCCAGGAACAGCGCTGTATGACATTGT
AGTTGTTATTTTTGCACATATTTCGTGCACATATGTTGTATGTAAAATCTTCAATCCATTATCCGTAGCGTTTCACATTC
ATCTTATGTATTTCCTCATTTTAAAAGTAAAAAGTTTGTAAATCTGCGCTAATCGCCTTTTACTTTTAGGCTTTTAGCAA
AGCACGTGTAGCATCATCTGGTAATTTTTCCGCCGTAAGTAAATGTAATAGTCATTTAGCTGCAAATGCATATATGCTTA
CCACGACAAATGGATATGTCCCATCATCTTTTCTAATCTTTATAAAATGTAATCATAAACTCGTCGTTCGAGATTAAAAA
GGCAACTGGCCTCTCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47398.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis