Browse Element(s) Details


Os.47568.1.A1_s_at

Description gb:BX900235
DB_XREF= gi:40492365
DB_XREF=BX900235
CLONE=y642c08p3
TID=Os.47568.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47568 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0728011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07240OsAffx.3761.1.S1_x_at2/114+3828415..3831227hypothetical protein
LOC_Os04g07250OsAffx.25903.4.S1_at11/114+3834749..3836797hypothetical protein
LOC_Os04g07250OsAffx.25903.5.S1_s_at11/114+3834749..3836797hypothetical protein
LOC_Os04g07260OsAffx.13703.1.S1_x_at11/114+3840464..3845035hypothetical protein
LOC_Os04g07260Os.15125.1.S1_x_at10/114+3840464..3845035hypothetical protein
LOC_Os04g07260Os.15125.1.S1_at8/114+3840464..3845035hypothetical protein
LOC_Os04g07260Os.26930.1.S2_x_at1/114+3840464..3845035hypothetical protein
LOC_Os04g07269OsAffx.1198.1.S1_at1/114+3848303..3849160NA
LOC_Os04g07280Os.47568.1.A1_s_at11/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.25907.1.S1_at11/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.25907.1.S1_x_at11/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.25907.2.S1_x_at2/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.30400.1.S1_x_at2/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.25907.2.S1_at1/114+3853075..3856415expressed protein
LOC_Os04g07290OsAffx.21897.5.S1_x_at4/114+3858503..3861427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07300NANA4+3861743..3867852retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07310NANA4+3873295..3873835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07320NANA4+3874876..3880920retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47568.1.A1_s_at--48--5531Chr04:3856295..3856319 (25 bp)
GAAAAGTGAGATTGATGTCCTCATC
LOC_Os04g07280
Os.47568.1.A1_s_at--909--2431Chr04:3856296..3856320 (25 bp)
AAAAGTGAGATTGATGTCCTCATCA
LOC_Os04g07280
Os.47568.1.A1_s_at--286--2871Chr04:3856298..3856322 (25 bp)
AAGTGAGATTGATGTCCTCATCAAG
LOC_Os04g07280
Os.47568.1.A1_s_at--682--951Chr04:3856321..3856345 (25 bp)
AGGACAATGAGTTGCTGCGTCTCGC
LOC_Os04g07280
Os.47568.1.A1_s_at--172--8151Chr04:3856322..3856346 (25 bp)
GGACAATGAGTTGCTGCGTCTCGCA
LOC_Os04g07280
Os.47568.1.A1_s_at--429--5611Chr04:3856323..3856347 (25 bp)
GACAATGAGTTGCTGCGTCTCGCAA
LOC_Os04g07280
Os.47568.1.A1_s_at--713--2231Chr04:3856324..3856348 (25 bp)
ACAATGAGTTGCTGCGTCTCGCAAT
LOC_Os04g07280
Os.47568.1.A1_s_at--1140--3191Chr04:3856325..3856349 (25 bp)
CAATGAGTTGCTGCGTCTCGCAATT
LOC_Os04g07280
Os.47568.1.A1_s_at--65--3011Chr04:3856326..3856350 (25 bp)
AATGAGTTGCTGCGTCTCGCAATTG
LOC_Os04g07280
Os.47568.1.A1_s_at--657--6111Chr04:3856353..3856377 (25 bp)
GAGGCACAGGAAAAGAATAAGGGAA
LOC_Os04g07280
Os.47568.1.A1_s_at--1096--9771Chr04:3856370..3856394 (25 bp)
TAAGGGAAGCATTTTATCATGCTTA
LOC_Os04g07280
Target Sequence 
GAAAAGTGAGATTGATGTCCTCATCAAGGACAATGAGTTGCTGCGTCTCGCAATTGTTGAGGCACAGGAAAAGAATAAGG
GAAGCATTTTATCATGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47568.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis