Browse Element(s) Details


Os.4758.1.S1_at

Description gb:AK070151.1
DB_XREF= gi:32980175
TID=Os.4758.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4758 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ADP-ribosylation factor (OSJNBa0056G17.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044N16, full insert sequence.
FL= gb:AK068771.1 gb:AK070151.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4294010/11ADP-ribosylation factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42880OsAffx.7892.1.S1_at11/1110+22788430..22796397retrotransposon protein, putative, unclassified
LOC_Os10g42900Os.46613.1.S2_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42900Os.46613.1.S1_s_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42900Os.46613.1.S1_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42910OsAffx.13097.1.S1_s_at4/1110+22802600..22812009transposon protein, putative, Mutator sub-class, expressed
LOC_Os10g42920OsAffx.6947.1.S1_at11/1110+22812227..22812651hypothetical protein
LOC_Os10g42930OsAffx.20120.1.S1_at10/1110+22813495..22814824hypothetical protein
LOC_Os10g42930Os.46738.1.S1_s_at1/1110+22813495..22814824hypothetical protein
LOC_Os10g42940Os.4758.1.S1_at10/1110+22816803..22818952ADP-ribosylation factor, putative, expressed
LOC_Os10g42950Os.2989.1.S1_at11/1110+22819042..22823531Protein kinase domain containing protein, expressed
LOC_Os10g42960Os.39043.1.S1_s_at9/1110+22827191..22829895SSS sodium solute transporter superfamily protein, expressed
LOC_Os10g42970OsAffx.11826.1.S1_at11/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.15132.1.S1_x_at8/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.23711.1.S1_x_at2/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.23711.1.S1_at1/1110+22830776..22832724expressed protein
LOC_Os10g42980Os.2987.3.S1_x_at11/1110+22835526..22837607retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g42999NANA10+22839762..22846039retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4758.1.S1_at--311--7571Chr10:22818418..22818442 (25 bp)
GGGCGCAATGACTCCGATGGAAGTA
LOC_Os10g42940
Os.4758.1.S1_at--570--611Chr10:22818442..22818466 (25 bp)
ATGCGAGGGCCTTGGTCTATATGAC
LOC_Os10g42940
Os.4758.1.S1_at--535--7131Chr10:22818456..22818480 (25 bp)
GTCTATATGACCTGAACAACCGTAT
LOC_Os10g42940
Os.4758.1.S1_at--80--2951Chr10:22818510..22818534 (25 bp)
AAGGCGATGGCCTCTATGAAGGATT
LOC_Os10g42940
Os.4758.1.S1_at--975--8511Chr10:22818534..22818558 (25 bp)
TGGACTGGTTAGCAACAACTCTGGA
LOC_Os10g42940
Os.4758.1.S1_at--581--611Chr10:22818563..22818587 (25 bp)
ATGCGAGCTTCAGGGCGGATAACTT
LOC_Os10g42940
Os.4758.1.S1_at--142--291Chr10:22818618..22818642 (25 bp)
ATAGTTGATCCTTGCGCTATGTGGA
LOC_Os10g42940
Os.4758.1.S1_at--653--7511Chr10:22818638..22818662 (25 bp)
GTGGATTGACTTGATGCCTGCATCT
LOC_Os10g42940
Os.4758.1.S1_at--207--2331Chr10:22818827..22818851 (25 bp)
AAAGTTCATCTTTTCGTGGAAGCGG
LOC_Os10g42940
Os.4758.1.S1_at--396--5411Chr10:22818870..22818894 (25 bp)
GAAGCTGCTACTGTACTGATATAAT
LOC_Os10g42940
Os.4758.1.S1_at--163--4511NONE
GCCGTTATTTATCTTATCGTTGACA
NONE
Target Sequence 
GGGCGCAATGACTCCGATGGAAGTATGCGAGGGCCTTGGTCTATATGACCTGAACAACCGTATATGGCATATCCAAGGAA
CCTGTGCTCTCAAAGGCGATGGCCTCTATGAAGGATTGGACTGGTTAGCAACAACTCTGGATGAGATGCGAGCTTCAGGG
CGGATAACTTCAACATCATCGTCATGAAGAATAACAAGGGATAGTTGATCCTTGCGCTATGTGGATTGACTTGATGCCTG
CATCTTGCTTTCTTTTCCATTTGATTTCCTCCTCTCCTGTTGTAGCTATTGGTCGTGAACTGGGCGAGGCTTTTTAGTAA
AGCTTTGATTCAGGCAAAACTGTAGTGTTACGAAAGACAGGTGACAGTGATGCACTTGCACTTNGGGAGGNAGTGGTTGG
TTTACTTACTGAAAGTTCATCTTTTCGTGGAAGCGGGAGTGGTTGTAAATATATGAAGCTGCTACTGTACTGATATAATT
GTGGTTGCTCTTGAACCNGTTGTATTNNNNAANNNNNANANNNNAANANNNNNNNNNNACTGTCATGCCGTTATTTATCT
TATCGTTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4758.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis