Browse Element(s) Details


Os.47703.1.S1_at

Description gb:CA765900
DB_XREF= gi:27547871
DB_XREF=AF53-Rpf_09_F07_T7_020.ab1
CLONE=C0003199
TID=Os.47703.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47703 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g338606/1160S ribosomal protein L44, putative, expressed
LOC_Os07g339796/1160S ribosomal protein L44, putative, expressed
LOC_Os07g338806/1160S ribosomal protein L44, putative, expressed
LOC_Os07g338981/1160S ribosomal protein L44, putative, expressed
LOC_Os07g339971/1160S ribosomal protein L44, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33820NANA7+20238394..20239506transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g33830NANA7+20241507..20243199retrotransposon protein, putative, unclassified
LOC_Os07g33840NANA7+20243777..20245451retrotransposon protein, putative, unclassified
LOC_Os07g33850Os.53166.1.S1_at11/117+20247861..20251380small GTP-binding protein domain containing protein, expressed
LOC_Os07g33860Os.22631.2.S1_s_at10/117+20255787..2025675760S ribosomal protein L44, putative, expressed
LOC_Os07g33860Os.47703.1.S1_at6/117+20255787..2025675760S ribosomal protein L44, putative, expressed
LOC_Os07g33870Os.22631.2.S1_s_at10/117+20259520..2026118960S ribosomal protein L44, putative, expressed
LOC_Os07g33880Os.22631.2.S1_s_at9/117+20266130..2026774660S ribosomal protein L44, putative, expressed
LOC_Os07g33880Os.47703.1.S1_at6/117+20266130..2026774660S ribosomal protein L44, putative, expressed
LOC_Os07g33889OsAffx.28733.1.S1_at10/117+20268829..20269831hypothetical protein
LOC_Os07g33898Os.22631.2.S1_s_at11/117+20271899..2027412660S ribosomal protein L44, putative, expressed
LOC_Os07g33898Os.47703.1.S1_at1/117+20271899..2027412660S ribosomal protein L44, putative, expressed
LOC_Os07g33910Os.47946.1.S1_s_at11/117+20275701..20278242Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os07g33910Os.47946.1.S1_at11/117+20275701..20278242Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47703.1.S1_at--28--751NONE
ATGTTATGATACACTGGTTCCTGTT
NONE
Os.47703.1.S1_at--713--6471NONE
GATACACTGGTTCCTGTTTTCAGCC
NONE
Os.47703.1.S1_at--940--8571NONE
TGGTTCCTGTTTTCAGCCCAATAAC
NONE
Os.47703.1.S1_at--967--10011NONE
TAGAAGATCGTGCTGAACCTCCATC
NONE
Os.47703.1.S1_at--743--1791NONE
ACCCCATCAAGAGGTCAACCATTTC
NONE
Os.47703.1.S1_at--1132--7617Chr07:20256622..20256646 (25 bp)
GGGAACATCTCTTTTCTAAATTGCT
LOC_Os07g33860
Os.47703.1.S1_at--94--3774Chr07:20304006..20304030 (25 bp)
CTCTTTTCTAAATTGCTTGCTACCT
LOC_Os07g33979
Os.47703.1.S1_at--1133--2234Chr07:20304015..20304039 (25 bp)
AAATTGCTTGCTACCTACTGGATAC
LOC_Os07g33979
Os.47703.1.S1_at--116--1254Chr07:20304043..20304067 (25 bp)
AGTTGTTGGTCTACTGTGCTTCAAT
LOC_Os07g33979
Os.47703.1.S1_at--416--7814Chr07:20304050..20304074 (25 bp)
GGTCTACTGTGCTTCAATATTTCAA
LOC_Os07g33979
Os.47703.1.S1_at--324--3894Chr07:20304056..20304080 (25 bp)
CTGTGCTTCAATATTTCAATGTTAT
LOC_Os07g33979
Target Sequence 
ATGTTATGATACACTGGTTCCTGTTTTCAGCCCAATAACCCCCTAGAAGATCGTGCTGAACCTCCATCCCTAACCTCCAA
CATTACTCCCAGCACCCCATCAAGAGGTCAACCATTTCGAGATTGGTGGAGACNAGAAGGNNNAGGGAACATCTCTTTTC
TAAATTGCTTGCTACCTACTGGATACTANAGTTGTTGGTCTACTGTGCTTCAATATTTCAATGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47703.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis