Browse Element(s) Details


Os.47736.1.S1_at

Description gb:AK106725.1
DB_XREF= gi:32991934
TID=Os.47736.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47736 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H01, full insert sequence.
FL= gb:AK106725.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4216011/11kinesin motor protein, putative, expressed
LOC_Os01g643701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42100OsAffx.7861.1.S1_x_at5/1112+26071350..26075120hypothetical protein
LOC_Os12g42110OsAffx.7861.1.S1_x_at10/1112+26076981..26082102hypothetical protein
LOC_Os12g42110OsAffx.7861.1.S1_at9/1112+26076981..26082102hypothetical protein
LOC_Os12g42120OsAffx.20084.1.S1_at11/1112+26084259..26086439pentatricopeptide, putative
LOC_Os12g42130Os.50779.1.S1_at11/1112+26086767..26089282TRANSPARENT TESTA 12 protein, putative, expressed
LOC_Os12g42140Os.27662.1.S1_at11/1112+26090409..26093235G-patch domain containing protein, expressed
LOC_Os12g42150Os.20258.1.S1_at11/1112+26094981..26097138transducin family protein, putative, expressed
LOC_Os12g42160OsAffx.20085.1.S1_x_at11/1112+26097414..26102591kinesin motor protein, putative, expressed
LOC_Os12g42160Os.47736.1.S1_at11/1112+26097414..26102591kinesin motor protein, putative, expressed
LOC_Os12g42170NANA12+26104714..26105331hypothetical protein
LOC_Os12g42180Os.10241.1.S1_at11/1112+26105882..26108174ribosomal protein L14 containing protein, expressed
LOC_Os12g42190Os.19899.1.S1_x_at11/1112+26121447..26125141transposon protein, putative, unclassified, expressed
LOC_Os12g42190Os.19899.2.S1_at11/1112+26121447..26125141transposon protein, putative, unclassified, expressed
LOC_Os12g42190OsAffx.31549.2.S1_x_at1/1112+26121447..26125141transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
GO:0008017molecular_functionmicrotubule binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47736.1.S1_at--762--4831Chr12:26097897..26097921 (25 bp)
GCTCAACTAGAGTGATACTCCCTCT
LOC_Os12g42160
Os.47736.1.S1_at--678--6491Chr12:26097819..26097843 (25 bp)
GATAGTCATAGATACGTCGCGTCCC
LOC_Os12g42160
Os.47736.1.S1_at--81--7252Chr12:26097799..26097823 (25 bp)
GTCCCTCTAGAATCCCTTATATTAT
LOC_Os12g42160
Os.47736.1.S1_at--1116--7711Chr12:26097681..26097705 (25 bp)
GGTGTTGATACCTCATTAGATTGTG
LOC_Os12g42160
Os.47736.1.S1_at--1142--7711Chr12:26097647..26097671 (25 bp)
GGGTGTGCTTGAGTTCTCGAGTATT
LOC_Os12g42160
Os.47736.1.S1_at--825--71Chr12:26097543..26097567 (25 bp)
ATTGCTGGAGTGTTTGATCTGGCTG
LOC_Os12g42160
Os.47736.1.S1_at--874--3911Chr12:26097525..26097549 (25 bp)
CTGGCTGTCAGATTCTATTTTACGA
LOC_Os12g42160
Os.47736.1.S1_at--521--9951Chr12:26097505..26097529 (25 bp)
TACGAAACTGTTTCTTGCTCGGATC
LOC_Os12g42160
Os.47736.1.S1_at--875--6831Chr12:26097496..26097520 (25 bp)
GTTTCTTGCTCGGATCAGGTTTACA
LOC_Os12g42160
Os.47736.1.S1_at--917--6791Chr12:26097478..26097502 (25 bp)
GTTTACAAGTGTTTTCCAGTTCAAG
LOC_Os12g42160
Os.47736.1.S1_at--1056--6411Chr12:26097434..26097458 (25 bp)
GATCTCAAGTGTTTTCCAGTTCAAG
LOC_Os12g42160
Target Sequence 
GCTCAACTAGAGTGATACTCCCTCTATCCCATAGTATAATGGATTTTGAAAAGAAGTGATATATCTAGGACTATGAATGA
TAGTCATAGATACGTCGCGTCCCTCTAGAATCCCTTATATTATGCGATGAAGGGAGTATTATGCATCGTCNCTCAGCTCA
GACNGGTGAGTGAAGGAGAGACTTNTAGAATTGGGAGTAGTTTTAGGAGGGTTTCAGGTGTTGATACCTCATTAGATTGT
GTNNTGTCGTGGGTGTGCTTGAGTTCTCGAGTATTGTGAGAGAACTCTTTGCTGNTGTTTCNTTGTGTTCATAGATTGAT
GATNNNNTGGATTGGTTGATCTGGNTGCCAGATCTTAGATTGCTGGAGTGTTTGATCTGGCTGTCAGATTCTATTTTACG
AAACTGTTTCTTGCTCGGATCAGGTTTACAAGTGTTTTCCAGTTCAAGTTTGATCAAATTCTGTAATGATCTCAAGTGTT
TTCCAGTTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis