Browse Element(s) Details


Os.47741.1.S1_x_at

Description gb:AK070863.1
DB_XREF= gi:32980886
TID=Os.47741.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47741 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033087M03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073K07, full insert sequence.
FL= gb:AK070863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4277011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42730Os.46012.2.S1_x_at7/114+25068569..25074240retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g42730Os.27088.1.A1_x_at5/114+25068569..25074240retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g42730Os.46012.3.S1_x_at4/114+25068569..25074240retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g42740OsAffx.26434.1.S1_at11/114+25078094..25080475D-mannose binding lectin family protein
LOC_Os04g42750OsAffx.1353.1.S1_x_at1/114+25083899..25085737transposon protein, putative, unclassified
LOC_Os04g42760Os.53077.1.S1_at11/114+25088049..25089515sialyltransferase, putative, expressed
LOC_Os04g42770Os.47741.1.S1_x_at11/114+25095177..25101346expressed protein
LOC_Os04g42770Os.47741.2.S1_at10/114+25095177..25101346expressed protein
LOC_Os04g42784Os.49455.1.S1_at11/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784OsAffx.14245.1.S1_x_at10/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784Os.56006.1.S1_at1/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784OsAffx.21705.1.S1_x_at1/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42800Os.51212.1.S1_at11/114+25121281..25122895expressed protein
LOC_Os04g42810OsAffx.29600.2.S1_s_at11/114+25123866..25125657hAT family dimerisation domain containing protein
LOC_Os04g42810OsAffx.29600.1.S1_at4/114+25123866..25125657hAT family dimerisation domain containing protein
LOC_Os04g42820OsAffx.29599.1.S1_s_at11/114+25125796..25126708hypothetical protein
LOC_Os04g42820OsAffx.29599.2.S1_at8/114+25125796..25126708hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47741.1.S1_x_at--521--10571Chr04:25095595..25095619 (25 bp)
TTCTTTCATATGAGCACTTGCCTTG
LOC_Os04g42770
Os.47741.1.S1_x_at--457--10692Chr04:25095578..25095602 (25 bp)
TTGCCTTGAATTTTGTTGTGCTGAA
LOC_Os04g42770
Os.47741.1.S1_x_at--678--311Chr04:25095487..25095511 (25 bp)
ATACCTACAGCTCAGATTGGCCAAA
LOC_Os04g42770
Os.47741.1.S1_x_at--897--11Chr04:25095472..25095496 (25 bp)
ATTGGCCAAAATCGTGCAGTTCTTT
LOC_Os04g42770
Os.47741.1.S1_x_at--1066--9411Chr04:25095461..25095485 (25 bp)
TCGTGCAGTTCTTTACTCTGTAGAT
LOC_Os04g42770
Os.47741.1.S1_x_at--865--771Chr04:25095438..25095462 (25 bp)
ATGTCCTACTGGTCAAATTGGGTTA
LOC_Os04g42770
Os.47741.1.S1_x_at--295--3451Chr04:25095384..25095408 (25 bp)
CAGTAGTATTGTAGCTTTTTGGGAA
LOC_Os04g42770
Os.47741.1.S1_x_at--690--3671Chr04:25095347..25095371 (25 bp)
CTTTTAGTGGCCGTGTGTGTTTGAC
LOC_Os04g42770
Os.47741.1.S1_x_at--1030--6131Chr04:25095319..25095343 (25 bp)
GAGGTGCAGCAGAACACTGCTCCAT
LOC_Os04g42770
Os.47741.1.S1_x_at--350--1432Chr07:28772695..28772800 (25 bp)
AGAACACTGCTCCATATGACCATAT
NONE
Os.47741.1.S1_x_at--712--151Chr04:25095272..25095296 (25 bp)
ATTATATAATGCATTCCGGCGCCAG
LOC_Os04g42770
Target Sequence 
TTCTTTCATATGAGCACTTGCCTTGAATTTTGTTGTGCTGAAAGAATTCCTCAGCAGCTTCATAGATTGTATATAAGTCC
ATGTANTTGCTTACTCTTGCTTCTGCTTATACCTACAGCTCAGATTGGCCAAAATCGTGCAGTTCTTTACTCTGTAGATG
TCCTACTGGTCAAATTGGGTTAGTCAGAAGTCTAACAATAGCATATGGTGTCAGTAGTATTGTAGCTTTTTGGGAAGCGA
AATACTAACTTTTAGTGGCCGTGTGTGTTTGACTTTGAGGTGCAGCAGAACACTGCTCCATATGACCATATGCTGCAAAG
AGTATTATATAATGCATTCCGGCGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47741.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis