Browse Element(s) Details


Os.47749.1.S1_at

Description gb:NM_192684.1
DB_XREF= gi:34912451
GEN=P0681B11.30
TID=Os.47749.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0681B11.30 (P0681B11.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0681B11.30 (P0681B11.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4208011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42030Os.41335.2.S1_x_at11/111+24165857..24167611ATPase, AAA family protein, expressed
LOC_Os01g42050OsAffx.23629.1.S1_s_at11/111+24167701..24170395zinc ribbon 1, putative
LOC_Os01g42050OsAffx.23629.2.S1_at8/111+24167701..24170395zinc ribbon 1, putative
LOC_Os01g42040Os.23694.1.S1_at11/111+24170122..24173706Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g42060Os.41333.1.A1_at11/111+24173889..24177174expressed protein
LOC_Os01g42070OsAffx.21384.2.S1_x_at11/111+24177717..24181332kinesin motor protein, putative, expressed
LOC_Os01g42080Os.47749.1.S1_at11/111+24182576..24188461expressed protein
LOC_Os01g42090Os.33697.1.S1_at11/111+24191529..24194053nodulin MtN3 protein, putative, expressed
LOC_Os01g42100OsAffx.21382.1.S1_at11/111+24202161..24203062hypothetical protein
LOC_Os01g42110Os.33697.1.S1_at1/111+24204472..24207094nodulin MtN3 protein, putative
LOC_Os01g42120Os.47998.1.S1_at10/111+24208748..24211054expressed protein
LOC_Os01g42130NANA1+24212148..24212573expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0009524cellular_componentphragmoplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47749.1.S1_at--835--6931Chr01:24186976..24187000 (25 bp)
GTAGCAAACCCTGAACACCAACAAG
LOC_Os01g42080
Os.47749.1.S1_at--256--5351Chr01:24187147..24187171 (25 bp)
GAAGATTCTTCTAATGCTCATGATT
LOC_Os01g42080
Os.47749.1.S1_at--473--10711Chr01:24187182..24187206 (25 bp)
TTGCACGAACAATTCCAGGCCAGTT
LOC_Os01g42080
Os.47749.1.S1_at--467--1091Chr01:24187247..24187268 (22 bp)
AGGGCGCATCTCAACCATCAGGAAG
LOC_Os01g42080
Os.47749.1.S1_at--1021--8171Chr01:24187628..24187652 (25 bp)
GGAAGCCAAGGCCTGTATGACAAAT
LOC_Os01g42080
Os.47749.1.S1_at--664--6251Chr01:24187709..24187733 (25 bp)
GATGGTGGTGAAACCTTGCCTGGAT
LOC_Os01g42080
Os.47749.1.S1_at--596--831Chr01:24187732..24187756 (25 bp)
ATGGAGGCTGACACTGCCGGCATTA
LOC_Os01g42080
Os.47749.1.S1_at--377--4491Chr01:24187747..24187771 (25 bp)
GCCGGCATTACTTTCTCAGGACAAA
LOC_Os01g42080
Os.47749.1.S1_at--394--2871Chr01:24187791..24187815 (25 bp)
AAGTGGAGCCTCAGATTAGCCTTCT
LOC_Os01g42080
Os.47749.1.S1_at--297--6311Chr01:24187978..24188002 (25 bp)
GATGACCCTGTTACGTCTGTTAGAA
LOC_Os01g42080
Os.47749.1.S1_at--529--5551Chr01:24188000..24188024 (25 bp)
GAAAGCTTTTCATGACACCACCTTC
LOC_Os01g42080
Target Sequence 
GTAGCAAACCCTGAACACCAACAAGGGGGTTCACATTCAGATACAAGTAGGGTTACCAGCACAGGAGAAGTTTCCAATGA
AGAATCAGAAACAGGTCATGCTGCAATCAAAAGTCACACAAGCACAGATGAACTTGGCCAACATGGATCAGATCCTAAAT
CTTTACCAGTTGAAGATTCTTCTAATGCTCATGATTTGGCAAAGACTTGCACGAACAATTCCAGGCCAGTTCAGGCTGCC
ACACTCACAAAATCGTCTAACGATGGGGAAAAGGGCGCATCTCAACCATCAGGAAGCCAAGGCCTGTATGACAAATTGAA
TGAATTTGATCCTATGAAGCAGCACAGGACTTTCTGCCCTTGGATATGCCCTGATGGTGGTGAAACCTTGCCTGGATGGA
GGCTGACACTGCCGGCATTACTTTCTCAGGACAAAAGAATTGATGAGGATTCACAAGTGGAGCCTCAGATTAGCCTTCTT
AGTGAGGAGGATGACCCTGTTACGTCTGTTAGAAAGCTTTTCATGACACCACCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis