Browse Element(s) Details


Os.47868.1.S1_at

Description gb:BE039667
DB_XREF= gi:8334683
DB_XREF=OC02C01
TID=Os.47868.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47868 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_565528.1 (A.thaliana) putative beta-hydroxyacyl-ACP dehydratase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g128408/11beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12800Os.54847.1.S1_at11/118+7577145..7582056Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os08g12810OsAffx.5796.1.S1_at9/118+7582705..7583889hypothetical protein
LOC_Os08g12820Os.15239.1.S1_at11/118+7585220..7590670Proteasome/cyclosome repeat family protein, expressed
LOC_Os08g12830Os.46126.1.S1_at7/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12830Os.46126.1.S1_x_at7/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12830Os.5970.1.S1_at4/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12840OsAffx.30522.1.S1_at11/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12840OsAffx.29165.1.S1_at10/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12840Os.47868.1.S1_at8/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12850Os.11196.1.S1_at11/118+7610445..7613923pentatricopeptide, putative, expressed
LOC_Os08g12850OsAffx.29166.1.S1_at11/118+7610445..7613923pentatricopeptide, putative, expressed
LOC_Os08g12860NANA8+7619859..7621711transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g12870Os.47463.1.S1_x_at6/118+7623934..7627631transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g12870Os.14491.2.S1_x_at5/118+7623934..7627631transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0019171molecular_function3-hydroxyacyl-[acyl-carrier protein] dehydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47868.1.S1_at--635--3491NONE
CATGGTTGAGGCTATGGCCCAGGTT
NONE
Os.47868.1.S1_at--536--4891Chr08:7606341..7606365 (25 bp)
GCTTACGTTGGTGGTGACCTAGTGT
LOC_Os08g12840
Os.47868.1.S1_at--635--9251Chr08:7606301..7606325 (25 bp)
TCCTGGTTAGCGCAACCGAATAGTG
LOC_Os08g12840
Os.47868.1.S1_at--881--7332Chr10:12421690..12421714 (25 bp)
GTGCAAAGGGCACCTAGTATTGTGT
NONE
Os.47868.1.S1_at--205--4312Chr10:12421702..12421726 (25 bp)
CCTAGTATTGTGTGATTCTCTTGTA
NONE
Os.47868.1.S1_at--725--1912Chr10:12421745..12421766 (22 bp)
ACGGGATGAGGTTCATTGCTTGAGA
NONE
Os.47868.1.S1_at--1050--10351Chr08:7606193..7606217 (25 bp)
TTTTGAACTGAACTTACGGCTTTGA
LOC_Os08g12840
Os.47868.1.S1_at--849--1932Chr10:12421791..12422012 (25 bp)
ACGGCTTTGAGGCTATCTTTTCATT
NONE
Os.47868.1.S1_at--47--271Chr08:7606113..7606137 (25 bp)
ATATGTTCCGTTCAGGCGCTTAATT
LOC_Os08g12840
Os.47868.1.S1_at--398--3151NONE
AATTCTACCTATCTGGCTGTGGATG
NONE
Os.47868.1.S1_at--1010--5231NONE
GAATACATGATTCAATGCTTTTCCT
NONE
Target Sequence 
CATGGTTGAGGCTATGGCCCAGGTTGGGGGNCTGGTGATGTTGCAGCCTGAAATTGGCGGATCTCGGGACAATTTCTTCT
TTGCAGGAATTGATAAAGTGAGGTTCCGTAAGCCAGTAATTGCAGGGGATACCTTGATCATGAGAATGACTCTGACCAAG
TATCAGAAAAGATTTGGTCTTGCCAAGATGGAAGGAAAAGCTTACGTTGGTGGTGACCTAGTGTGCGAGGGGGAGTTCCT
CCTGGTTAGCGCAACCGAATAGTGCAAAGGGCACCTAGTATTGTGTGATTCTCTTGTAGAATCATTGATTAGAACGGGAT
GAGGTTCATTGCTTGAGAAGAGTTGAGTTTTGAACTGAACTTACGGCTTTGAGGCTATCTTTTCATTTTACCTATTAGGT
GAATTGAGTTCAAATGTCCAANGCGCCATATGTTCCGTTCAGGCGCTTAATTCTACCTATCTGGCTGTGGATGGTGTTGG
TAACTTGGAATACATGATTCAATGCTTTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis