Browse Element(s) Details


Os.47870.1.S1_at

Description gb:AK108041.1
DB_XREF= gi:32993250
TID=Os.47870.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47870 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-D07, full insert sequence.
FL= gb:AK108041.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2375410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23720Os.30016.1.S1_at11/118+14216532..14221737Glycosyl hydrolases family 17 protein, expressed
LOC_Os08g23730Os.15669.1.S1_at11/118+14224138..14227984GMP synthase, putative, expressed
LOC_Os08g23740OsAffx.17117.1.S1_at11/118+14229835..14233602subtilisin-like protease, putative, expressed
LOC_Os08g23740OsAffx.17117.1.S1_x_at11/118+14229835..14233602subtilisin-like protease, putative, expressed
LOC_Os08g23750OsAffx.29320.1.S1_at11/118+14234271..14234814hypothetical protein
LOC_Os08g23754Os.50306.1.S1_at11/118+14239722..14244173expressed protein
LOC_Os08g23754Os.47870.1.S1_at10/118+14239722..14244173expressed protein
LOC_Os08g23760NANA8+14247040..14250267retrotransposon protein, putative, unclassified
LOC_Os08g23770Os.33601.3.S1_x_at2/118+14250874..14262006retrotransposon protein, putative, unclassified
LOC_Os08g23780Os.13608.1.S1_at11/118+14265084..14270229Glycosyltransferase QUASIMODO1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47870.1.S1_at--808--10092Chr06:25078251..25078275 (25 bp)
TATGGTAATTTCCACGAACCCGTAG
NONE
Os.47870.1.S1_at--1110--5432Chr06:25078266..25078290 (25 bp)
GAACCCGTAGATTCTTTACTGTCCT
NONE
Os.47870.1.S1_at--705--6532Chr06:25078275..25078299 (25 bp)
GATTCTTTACTGTCCTAATAGGCCT
NONE
Os.47870.1.S1_at--538--10092Chr06:25078293..25078317 (25 bp)
TAGGCCTAGGTGCATTTCTTATCAA
NONE
Os.47870.1.S1_at--21--3531NONE
CATGCATGCTGCTATTGGAATATTT
NONE
Os.47870.1.S1_at--518--10772Chr06:25078445..25078469 (25 bp)
TTGAGGAGCATATCTTTCTATCATT
NONE
Os.47870.1.S1_at--436--7492Chr06:25078545..25078569 (25 bp)
GTGGGTGAATACCAACGTGCATTTG
NONE
Os.47870.1.S1_at--445--5492Chr06:25078576..25078600 (25 bp)
GAACATAAATCAACTGGTCCTGCTA
NONE
Os.47870.1.S1_at--383--7792Chr06:25078591..25078615 (25 bp)
GGTCCTGCTAATCTATGATTTGCTC
NONE
Os.47870.1.S1_at--563--732Chr06:25078636..25078660 (25 bp)
ATGTTTCCAGGTGAATACCACGGTA
NONE
Os.47870.1.S1_at--504--9972Chr06:25078651..25078675 (25 bp)
TACCACGGTACCACCATGCATTTGG
NONE
Target Sequence 
TATGGTAATTTCCACGAACCCGTAGATTCTTTACTGTCCTAATAGGCCTAGGTGCATTTCTTATCAATCCAAAGGCAATA
CCATGCATGCTGCTATTGGAATATTTGGCAGAGCTTTAGATATTGGATTATCATATGACACCTATCTATATCTGTAATAC
TGTAGTACTCCATACTCATTAATCATTGTACAAATTGAGGAGCATATCTTTCTATCATTTTTACATGAGACTATGTCCTT
ACTGGTCCTTCTCATATGAGATTAGCTCATAAGAATTTCATACTTTTTGTTTTTGTGGGTGAATACCAACGTGCATTTGG
TGGAAGAACATAAATCAACTGGTCCTGCTAATCTATGATTTGCTCTTAAAAAGATTATATTTTTTATGTTTCCAGGTGAA
TACCACGGTACCACCATGCATTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47870.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis