Browse Element(s) Details


Os.47898.1.A1_at

Description gb:AK107256.1
DB_XREF= gi:32992465
TID=Os.47898.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-G08, full insert sequence.
FL= gb:AK107256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4993011/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49870NANA5+28530478..28533304retrotransposon protein, putative, unclassified
LOC_Os05g49880Os.11139.1.S1_at11/115+28534384..28538305Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g49890Os.8152.1.S1_at11/115+28539165..28541469GTP-binding nuclear protein Ran/TC4, putative, expressed
LOC_Os05g49900Os.53085.1.S1_at11/115+28541952..28544278Fatty acid elongase, putative, expressed
LOC_Os05g49910Os.57367.1.S1_x_at11/115+28545588..28548920expressed protein
LOC_Os05g49910Os.57367.1.S1_at11/115+28545588..28548920expressed protein
LOC_Os05g49910Os.20347.1.S1_at8/115+28545588..28548920expressed protein
LOC_Os05g49920OsAffx.27388.1.S1_at11/115+28549790..28552533pentatricopeptide, putative, expressed
LOC_Os05g49930Os.47898.1.A1_at11/115+28557003..28558717GRAS family transcription factor containing protein, expressed
LOC_Os05g49940Os.27218.1.A1_at11/115+28564193..28564952expressed protein
LOC_Os05g49950NANA5+28566615..28567103hypothetical protein
LOC_Os05g49960OsAffx.27389.1.S1_at11/115+28568952..28569428hypothetical protein
LOC_Os05g49970Os.13493.1.S1_at11/115+28571458..28578090Translation initiation factor IF-2, chloroplast precursor, putative, expressed
LOC_Os05g49970Os.13493.1.S1_s_at11/115+28571458..28578090Translation initiation factor IF-2, chloroplast precursor, putative, expressed
LOC_Os05g49980Os.52474.1.S1_at11/115+28580017..28583324F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006808biological_processregulation of nitrogen utilization
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010187biological_processnegative regulation of seed germination
GO:0010233biological_processphloem transport
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47898.1.A1_at--822--6031Chr05:28558178..28558202 (25 bp)
GAGATCGCCGACATCGTGAGCCGCG
LOC_Os05g49930
Os.47898.1.A1_at--585--8371Chr05:28558312..28558336 (25 bp)
GGCGATGCAGCTCCGCGAGTTCTCC
LOC_Os05g49930
Os.47898.1.A1_at--287--8291Chr05:28558343..28558367 (25 bp)
GGCTTCGGCGTCCAGGAGAACGGCG
LOC_Os05g49930
Os.47898.1.A1_at--525--4831Chr05:28558378..28558402 (25 bp)
GCTCACCTGGCATAGCCAGAGGCTG
LOC_Os05g49930
Os.47898.1.A1_at--995--291Chr05:28558389..28558413 (25 bp)
ATAGCCAGAGGCTGTACTCGGCGTC
LOC_Os05g49930
Os.47898.1.A1_at--849--3491Chr05:28558474..28558498 (25 bp)
CATGGAGGAGAGTCAGAACAGCAAC
LOC_Os05g49930
Os.47898.1.A1_at--223--7731Chr05:28558529..28558553 (25 bp)
GGTGGCCATGGTGCTCTCAACCAAA
LOC_Os05g49930
Os.47898.1.A1_at--88--7791Chr05:28558538..28558562 (25 bp)
GGTGCTCTCAACCAAATCATGCAGT
LOC_Os05g49930
Os.47898.1.A1_at--940--7391Chr05:28558610..28558634 (25 bp)
GTGATCGATTTTGATGAACCAGATT
LOC_Os05g49930
Os.47898.1.A1_at--679--3111Chr05:28558648..28558672 (25 bp)
AATATTGCATTTAGTCTGAGAGAGC
LOC_Os05g49930
Os.47898.1.A1_at--399--5951Chr05:28558669..28558693 (25 bp)
GAGCAACATGTTGGTTTTCGAATTA
LOC_Os05g49930
Target Sequence 
GAGATCGCCGACATCGTGAGCCGCGAGGGGAGCAGCCGGNTGGAGCGCCACGAGCAGATGCCGCGGTGGNTGGAGAGGCT
GCGGCGCGGGGGGATGACGCAGCTGCCGCTCGGCGCCACCGGCCTCTGGCAGGCGGCGATGCAGCTCCGCGAGTTCTCCG
GCGCCGGCTTCGGCGTCCAGGAGAACGGCGGCTTCCTCACGCTCACCTGGCATAGCCAGAGGCTGTACTCGGCGTCGGCG
TGGCGCGCGACCGCGGGGAAGAAGATGACGATGATGGCTAGCGGCGCCGCCGACGCCATGGAGGAGAGTCAGAACAGCAA
CACCAACGGCGGCGGCGGCGGAAGCAGTGGTGGTGGCCATGGTGCTCTCAACCAAATCATGCAGTGAAGAAGAGGGATGT
TTGGGTTTCGAAGTTTATGTGGGNGAAACAATGTGATCGATTTTGATGAACCAGATTAAAAAGTTGTAATAATATTGCAT
TTAGTCTGAGAGAGCAACATGTTGGTTTTCGAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47898.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis