Browse Element(s) Details


Os.47911.1.S1_at

Description gb:AK105146.1
DB_XREF= gi:32990355
TID=Os.47911.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47911 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-B12, full insert sequence.
FL= gb:AK105146.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g240601/11Tetratricopeptide repeat protein 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24040Os.23413.1.A1_at10/113+13612561..13616323Ubiquitin ligase SINAT5, putative, expressed
LOC_Os03g24050Os.54844.1.S1_at1/113+13628883..13634122hypothetical protein
LOC_Os03g24060Os.47911.1.S1_at1/113+13638491..13641604Tetratricopeptide repeat protein 11, putative, expressed
LOC_Os03g24070Os.55604.1.S1_at9/113+13645737..13648962hydrolase, putative, expressed
LOC_Os03g24080NANA3+13653613..13654080hypothetical protein
LOC_Os03g24090OsAffx.31294.1.S1_x_at9/113+13654817..13655898hypothetical protein
LOC_Os03g24090OsAffx.31294.1.S1_at7/113+13654817..13655898hypothetical protein
LOC_Os03g24090OsAffx.25093.1.S1_at2/113+13654817..13655898hypothetical protein
LOC_Os03g24100NANA3+13657533..13658626expressed protein
LOC_Os03g24110NANA3+13663611..13670561retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47911.1.S1_at--1033--8871Chr03:13638518..13638542 (25 bp)
TGAGGAGGCTCCTGTTATGAGTTGC
LOC_Os03g24060
Os.47911.1.S1_at--931--3291Chr03:13638424..13638448 (25 bp)
CACGGTAAACCTCGCGGTGGCCGCA
NONE
Os.47911.1.S1_at--21--7011Chr03:13638316..13638341 (25 bp)
GTACTTGAATGATGGCTACTACCTT
NONE
Os.47911.1.S1_at--840--851NONE
ATGGCTACTACCTTACATCGCGGAG
NONE
Os.47911.1.S1_at--53--10491NONE
TTACATCGCGGAGTACACTTTCACT
NONE
Os.47911.1.S1_at--911--8031NONE
GGAGTACACTTTCACTTACCTCGAC
NONE
Os.47911.1.S1_at--696--2191NONE
ACAACAAAAACACCTGTCGCCGGCT
NONE
Os.47911.1.S1_at--1102--8391NONE
GGCCCAGTAAACCTCAATCGAGCAA
NONE
Os.47911.1.S1_at--4--1491NONE
AGCAAGTTATGACTGCGGCGCCAAC
NONE
Os.47911.1.S1_at--519--1371NONE
AGAGCGACATAACGTCACGGACGGA
NONE
Os.47911.1.S1_at--153--1331NONE
AGAGGCAGGAAACCTACAGGCCGCC
NONE
Target Sequence 
TGAGGAGGCTCCTGTTATGAGTTGCAATCAGGATTTACGTAACCNTGTGGTTATCATGGTTATCATGTGCAGTAATTTTC
TCAGTTTTTGAAACCACGGTAAACCTCGCGGTGGCCGCACGGTTACCACGATAACTGTCTTACCGTGGGGTGGTTGTAAC
CCCGCTCAAAATGGTTTGGTAAAACTGGTTGCAATCCTTCAGTACTTGAATGATGGCTACTACCTTACATCGCGGAGTAC
ACTTTCACTTACCTCGACCACACAAACAACAAAACAACAAAAACACCTGTCGCCGGCTCGGCCCAGTAAACCTCAATCGA
GCAAGTTATGACTGCGGCGCCAACCAACCCATGGGGCAAGTGACAAAAAGAGCGACATAACGTCACGGACGGAGATAAAG
GGGCACGGGAAACCGGGGATCAACAAAAAGTGGAGACAAGCCATGGGAGGGGTATGAAAGACAAGGAGGCTCAAAGCGAC
AAAGGAGACGGCGATGGAGAGGCAGGAAACCTACAGGCCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis