Browse Element(s) Details


Os.47913.1.A1_at

Description gb:AK069121.1
DB_XREF= gi:32979145
TID=Os.47913.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47913 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-034-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007A14, full insert sequence.
FL= gb:AK104354.1 gb:AK069121.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3918010/1128 kDa ribonucleoprotein, chloroplast, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39150Os.47463.1.S1_x_at5/119+22470497..22480343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g39150Os.14491.2.S1_x_at5/119+22470497..22480343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g39160OsAffx.30200.1.S1_at10/119+22487767..22489686Papain family cysteine protease containing protein
LOC_Os09g39170OsAffx.30202.1.S1_x_at11/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39170OsAffx.30201.1.S1_at11/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39170Os.51754.1.S1_at1/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39170OsAffx.6233.1.S1_at1/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39180Os.47913.1.A1_at10/119+22504524..2250704528 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os09g39190OsAffx.30204.1.S1_at11/119+22507726..22512808Copine family protein, expressed
LOC_Os09g39200Os.47350.1.S1_at10/119+22513028..22516720expressed protein
LOC_Os09g39210Os.19603.1.S1_at11/119+22526772..22535007expressed protein
LOC_Os09g39210OsAffx.6530.1.S1_x_at11/119+22526772..22535007expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0009507cellular_componentchloroplast
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47913.1.A1_at--890--2131Chr09:22504924..22504948 (25 bp)
ACAGAGTTTGGATGGCCGTGCGCTG
LOC_Os09g39180
Os.47913.1.A1_at--182--9571Chr09:22504704..22504728 (25 bp)
TCTTGTTAACTGTTGGTTGTGGCCA
LOC_Os09g39180
Os.47913.1.A1_at--725--9811Chr09:22504698..22504722 (25 bp)
TAACTGTTGGTTGTGGCCACGAGTT
LOC_Os09g39180
Os.47913.1.A1_at--1042--10831Chr09:22504688..22504712 (25 bp)
TTGTGGCCACGAGTTGATGCACGTA
LOC_Os09g39180
Os.47913.1.A1_at--370--6051Chr09:22504678..22504702 (25 bp)
GAGTTGATGCACGTAGGCTACTGTT
LOC_Os09g39180
Os.47913.1.A1_at--462--6931Chr09:22504666..22504690 (25 bp)
GTAGGCTACTGTTATGATGCCCCTC
LOC_Os09g39180
Os.47913.1.A1_at--106--8311Chr09:22504663..22504687 (25 bp)
GGCTACTGTTATGATGCCCCTCTAC
LOC_Os09g39180
Os.47913.1.A1_at--392--1531Chr09:22504578..22504602 (25 bp)
AGCATGGTGTGTGTGGCATTTGTGC
LOC_Os09g39180
Os.47913.1.A1_at--482--2551Chr09:22504538..22504562 (25 bp)
AACTGCTTATTGGATCAGGCTTGTT
LOC_Os09g39180
Os.47913.1.A1_at--410--10231Chr09:22504531..22504555 (25 bp)
TATTGGATCAGGCTTGTTCACCCGC
LOC_Os09g39180
Os.47913.1.A1_at--311--9611Chr09:22504524..22504548 (25 bp)
TCAGGCTTGTTCACCCGCCTTAATT
NONE
Target Sequence 
ACAGAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCGCGCCGAGGCTTTTAATGGGATAGCA
GGCTTTGTGGGGGTTTAACAGCATCGGAGGCATCATAGCACGTCTGATACTGGTTTAGTCCCTCAAATAGTAGCTTTCTT
GCGATTCTTGGTTCTGTATCCTCCCAAGTCCTTTCTCATGCCTGCTGTTTACTGCTCCTTTCTTGTTAACTGTTGGTTGT
GGCCACGAGTTGATGCACGTAGGCTACTGTTATGATGCCCCTCTACCCCAATTTGTCGATGCATCCAAAAGTTTTGTCTA
ACATTTATCTATTTAAGCAAAAGAAGAGCATGGTGTGTGTGGCATTTGTGCTGTNTNTCTTNCGGAAACTGCTTATTGGA
TCAGGCTTGTTCACCCGCCTTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47913.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis