Browse Element(s) Details


Os.47916.1.S1_at

Description gb:AK100151.1
DB_XREF= gi:32985360
TID=Os.47916.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033123E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023015H06, full insert sequence.
FL= gb:AK100151.1 gb:AK103231.1 gb:AK063938.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2265011/11glycosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22600NANA2+13471763..13472498hypothetical protein
LOC_Os02g22610NANA2+13474881..13478035transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g22620NANA2+13481010..13483606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22630OsAffx.24388.1.S1_at8/112+13485651..13488773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g22640NANA2+13491955..13492290retrotransposon protein, putative, unclassified
LOC_Os02g22650Os.47916.1.S1_at11/112+13495407..13498719glycosyltransferase, putative, expressed
LOC_Os02g22660NANA2+13498911..13499570retrotransposon, putative, centromere-specific
LOC_Os02g22670OsAffx.24389.1.S1_at11/112+13501708..13503432hypothetical protein
LOC_Os02g22680OsAffx.24390.1.S1_at11/112+13505260..13507432Integral membrane protein DUF6 containing protein, expressed
LOC_Os02g22680Os.54088.1.S1_at1/112+13505260..13507432Integral membrane protein DUF6 containing protein, expressed
LOC_Os02g22690OsAffx.2717.1.S1_at9/112+13519332..13521711hypothetical protein
LOC_Os02g22690OsAffx.2717.1.S1_x_at9/112+13519332..13521711hypothetical protein
LOC_Os02g22690Os.54523.1.S1_at1/112+13519332..13521711hypothetical protein
LOC_Os02g22690OsAffx.25887.1.S1_at1/112+13519332..13521711hypothetical protein
LOC_Os02g22700OsAffx.8215.1.S1_at1/112+13522721..13527763retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22700Os.47004.1.S1_at1/112+13522721..13527763retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47916.1.S1_at--575--1791Chr02:13498157..13498181 (25 bp)
ACCGATGGTCTGTTTTACACTATGG
LOC_Os02g22650
Os.47916.1.S1_at--106--2411Chr02:13498317..13498341 (25 bp)
AAACACGGCCTATGCTTATAAAGCG
LOC_Os02g22650
Os.47916.1.S1_at--304--5231Chr02:13498392..13498416 (25 bp)
GAATCCGGATGCCAAGAGGTTTTGT
LOC_Os02g22650
Os.47916.1.S1_at--950--1011Chr02:13498408..13498432 (25 bp)
AGGTTTTGTGGGAGCTCACTCACCA
LOC_Os02g22650
Os.47916.1.S1_at--682--8791Chr02:13498463..13498487 (25 bp)
TGTTCTTGTAACCTGTCTCGTCTTT
LOC_Os02g22650
Os.47916.1.S1_at--334--9411Chr02:13498480..13498504 (25 bp)
TCGTCTTTCTGGATCGCTCTTGACA
LOC_Os02g22650
Os.47916.1.S1_at--295--3631Chr02:13498498..13498522 (25 bp)
CTTGACACGGGCTGCACAGGGATTA
LOC_Os02g22650
Os.47916.1.S1_at--167--7371Chr02:13498547..13498571 (25 bp)
GTGACTGCAACTTTAGCTGTAGCCG
LOC_Os02g22650
Os.47916.1.S1_at--937--4731Chr02:13498562..13498586 (25 bp)
GCTGTAGCCGATTTGAGTCGTTCAA
LOC_Os02g22650
Os.47916.1.S1_at--799--5811Chr02:13498622..13498646 (25 bp)
GACCCAACCTGACAGACTGTAGCTA
LOC_Os02g22650
Os.47916.1.S1_at--258--6971Chr02:13498640..13498664 (25 bp)
GTAGCTAGCCTTCAATGTCGTTTTC
LOC_Os02g22650
Target Sequence 
ACCGATGGTCTGTTTTACACTATGGGTGTGTTTAGATGGTGGAGAAGTTGGAAAGTTGGGAGAAAGTTGGTAGTTTGGAG
AAAAAGTTGGTACTTTACGTGAGTAGGAAAGTTTTCGATGCAATGTGATATGATGGCAAGTTGGGAATTTGGGTGGAACT
AAACACGGCCTATGCTTATAAAGCGGGACCAACGGGTTACAACAAGCGGGGGTTAAGGGTGAACGACGACGACAGGAATC
CGGATGCCAAGAGGTTTTGTGGGAGCTCACTCACCAATTCACCATCCAAATGCATTCCTCGGTCCCTGTTCTTGTAACCT
GTCTCGTCTTTCTGGATCGCTCTTGACACGGGCTGCACAGGGATTAGGATCAGTTGTAGTAGTTGTTATAGTGACTGCAA
CTTTAGCTGTAGCCGATTTGAGTCGTTCAAAAGGACCGGAAGGTTAGATCTAAAGGCACCAACACGACCCAACCTGACAG
ACTGTAGCTAGCCTTCAATGTCGTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis