Browse Element(s) Details


OsAffx.24389.1.S1_at

Description tigr:9630.m02184
TID=OsAffx.24389.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2267011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22610NANA2+13474881..13478035transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g22620NANA2+13481010..13483606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22630OsAffx.24388.1.S1_at8/112+13485651..13488773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g22640NANA2+13491955..13492290retrotransposon protein, putative, unclassified
LOC_Os02g22650Os.47916.1.S1_at11/112+13495407..13498719glycosyltransferase, putative, expressed
LOC_Os02g22660NANA2+13498911..13499570retrotransposon, putative, centromere-specific
LOC_Os02g22670OsAffx.24389.1.S1_at11/112+13501708..13503432hypothetical protein
LOC_Os02g22680OsAffx.24390.1.S1_at11/112+13505260..13507432Integral membrane protein DUF6 containing protein, expressed
LOC_Os02g22680Os.54088.1.S1_at1/112+13505260..13507432Integral membrane protein DUF6 containing protein, expressed
LOC_Os02g22690OsAffx.2717.1.S1_at9/112+13519332..13521711hypothetical protein
LOC_Os02g22690OsAffx.2717.1.S1_x_at9/112+13519332..13521711hypothetical protein
LOC_Os02g22690Os.54523.1.S1_at1/112+13519332..13521711hypothetical protein
LOC_Os02g22690OsAffx.25887.1.S1_at1/112+13519332..13521711hypothetical protein
LOC_Os02g22700OsAffx.8215.1.S1_at1/112+13522721..13527763retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22700Os.47004.1.S1_at1/112+13522721..13527763retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24389.1.S1_at--811--6973Chr02:13501804..13501828 (25 bp)
GTACCTCAGCAGATGCTTCCTTTTA
LOC_Os02g22670
OsAffx.24389.1.S1_at--363--931Chr02:13502104..13502128 (25 bp)
AGGCACCTCACGATGGAAGTTGTTT
LOC_Os02g22670
OsAffx.24389.1.S1_at--423--10771Chr02:13502123..13502147 (25 bp)
TTGTTTCCCTTTTCTCTTACAGAAG
LOC_Os02g22670
OsAffx.24389.1.S1_at--813--6071Chr02:13502404..13502428 (25 bp)
GAGTTTTCCATGTATCCTGATATTT
LOC_Os02g22670
OsAffx.24389.1.S1_at--781--6871Chr02:13503096..13503120 (25 bp)
GTATAGGGCTATCCGCAGAGCGCCA
LOC_Os02g22670
OsAffx.24389.1.S1_at--1115--2891Chr02:13503139..13503163 (25 bp)
AAGGTCATCCTTGATTTCCATGTGT
LOC_Os02g22670
OsAffx.24389.1.S1_at--661--10631Chr02:13503178..13503202 (25 bp)
TTCGCCCTCATAATAGGCCATTCTA
LOC_Os02g22670
OsAffx.24389.1.S1_at--1018--2411Chr02:13503207..13503231 (25 bp)
AAAACTCTTCTTAGATGTGCCGAGA
LOC_Os02g22670
OsAffx.24389.1.S1_at--813--5431Chr02:13503230..13503254 (25 bp)
GAACCGGAGTTCTCGACATCAAACT
LOC_Os02g22670
OsAffx.24389.1.S1_at--221--9831Chr02:13503258..13503282 (25 bp)
TAAATTGTCATTTTCCTTCCCGATC
LOC_Os02g22670
OsAffx.24389.1.S1_at--931--8791Chr02:13503312..13503336 (25 bp)
TGTTCCCGAGTCTGAGCCAATTGAA
LOC_Os02g22670
Target Sequence 
GTACCTCAGCAGATGCTTCCTTTTATAAAGCATTGCACAAGGCACCTCACGATGGAAGTTGTTTCCCTTTTCTCTTACAG
AAGGGGTGAAACAATGGTACACCCATACGACAAGGAGTTTTCCATGTATCCTGATATTTCCGCCGGAGGGTATAGGGCTA
TCCGCAGAGCGCCAATCAGGCACAATGATGTCAAGGTCATCCTTGATTTCCATGTGTTCGAAGTCTATGACTTCGCCCTC
ATAATAGGCCATTCTATAGAAAAACTCTTCTTAGATGTGCCGAGAACCGGAGTTCTCGACATCAAACTCGATAAATTGTC
ATTTTCCTTCCCGATCTCAAGGTCGAAAAACTCCTTGACGGAACCTGTTCCCGAGTCTGAGCCAATTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis