Browse Element(s) Details


OsAffx.24388.1.S1_at

Description tigr:9630.m02179
TID=OsAffx.24388.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g226308/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22570OsAffx.20729.1.S1_x_at3/112+13453650..13462703retrotransposon protein, putative, unclassified
LOC_Os02g22570Os.45976.1.S1_x_at1/112+13453650..13462703retrotransposon protein, putative, unclassified
LOC_Os02g22570OsAffx.28104.1.S1_at1/112+13453650..13462703retrotransposon protein, putative, unclassified
LOC_Os02g22580OsAffx.16407.2.S1_x_at1/112+13467193..13467580hypothetical protein
LOC_Os02g22580Os.40028.1.A1_at1/112+13467193..13467580hypothetical protein
LOC_Os02g22590OsAffx.12160.1.S1_at11/112+13467706..13470238expressed protein
LOC_Os02g22590OsAffx.16407.2.S1_x_at2/112+13467706..13470238expressed protein
LOC_Os02g22590Os.46303.1.S1_x_at2/112+13467706..13470238expressed protein
LOC_Os02g22590OsAffx.31874.1.S1_at1/112+13467706..13470238expressed protein
LOC_Os02g22600NANA2+13471763..13472498hypothetical protein
LOC_Os02g22610NANA2+13474881..13478035transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g22620NANA2+13481010..13483606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22630OsAffx.24388.1.S1_at8/112+13485651..13488773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g22640NANA2+13491955..13492290retrotransposon protein, putative, unclassified
LOC_Os02g22650Os.47916.1.S1_at11/112+13495407..13498719glycosyltransferase, putative, expressed
LOC_Os02g22660NANA2+13498911..13499570retrotransposon, putative, centromere-specific
LOC_Os02g22670OsAffx.24389.1.S1_at11/112+13501708..13503432hypothetical protein
LOC_Os02g22680OsAffx.24390.1.S1_at11/112+13505260..13507432Integral membrane protein DUF6 containing protein, expressed
LOC_Os02g22680Os.54088.1.S1_at1/112+13505260..13507432Integral membrane protein DUF6 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24388.1.S1_at--846--3971Chr02:13488702..13488726 (25 bp)
CGGTGTGAACGACGGCGGTAGCGAT
LOC_Os02g22630
OsAffx.24388.1.S1_at--159--1951Chr02:13488691..13488715 (25 bp)
ACGGCGGTAGCGATGGTGAGACCAT
LOC_Os02g22630
OsAffx.24388.1.S1_at--966--8611Chr02:13488678..13488702 (25 bp)
TGGTGAGACCATGAGGAATCCCCTC
LOC_Os02g22630
OsAffx.24388.1.S1_at--216--931Chr02:13488665..13488689 (25 bp)
AGGAATCCCCTCTCTTCAGCACTTT
LOC_Os02g22630
OsAffx.24388.1.S1_at--1060--1491Chr02:13488648..13488672 (25 bp)
AGCACTTTCCCGGATCCGTGGCAGT
LOC_Os02g22630
OsAffx.24388.1.S1_at--764--10291Chr02:13488642..13488666 (25 bp)
TTCCCGGATCCGTGGCAGTTTTAGG
LOC_Os02g22630
OsAffx.24388.1.S1_at--338--9271Chr02:13488639..13488658 (20 bp)
TCCGTGGCAGTTTTAGGGTTAAGCT
LOC_Os02g22630
OsAffx.24388.1.S1_at--1069--4991NONE
GCAGTTTTAGGGTTAAGCTTAATGA
NONE
OsAffx.24388.1.S1_at--753--7691NONE
GGGTAACTTTATAATGCTGCAGGAC
NONE
OsAffx.24388.1.S1_at--846--2511NONE
AACTTTATAATGCTGCAGGACGCCA
NONE
OsAffx.24388.1.S1_at--379--10351Chr02:13486010..13486477 (25 bp)
TTTATAATGCTGCAGGACGCCAAGG
LOC_Os02g22630
Target Sequence 
CGGTGTGAACGACGGCGGTAGCGATGGTGAGACCATGAGGAATCCCCTCTCTTCAGCACTTTCCCGGATCCGTGGCAGTT
TTAGGGTTAAGCTTAATGAGTTAGTGGGGGGTAACTTTATAATGCTGCAGGACGCCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24388.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis