Browse Element(s) Details


OsAffx.28104.1.S1_at

Description tigr:9634.m04327
TID=OsAffx.28104.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4468011/11hypothetical protein
LOC_Os02g225701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44620Os.8020.1.S1_at11/116+26942172..269488924-coumarate-CoA ligase 2, putative, expressed
LOC_Os06g44620Os.8020.2.S1_at11/116+26942172..269488924-coumarate-CoA ligase 2, putative, expressed
LOC_Os06g44630OsAffx.12125.2.S1_at4/116+26951629..26952601hypothetical protein
LOC_Os06g44630OsAffx.5580.1.S1_at1/116+26951629..26952601hypothetical protein
LOC_Os06g44640Os.6293.1.S1_at3/116+26953367..26954288hypothetical protein
LOC_Os06g44650OsAffx.12125.2.S1_at5/116+26955805..26956210hypothetical protein
LOC_Os06g44660Os.20322.1.S1_at11/116+26956544..26957614Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed
LOC_Os06g44670OsAffx.5106.1.S1_at11/116+26959707..26960371hypothetical protein
LOC_Os06g44680OsAffx.28104.1.S1_at11/116+26971932..26972545hypothetical protein
LOC_Os06g44690NANA6+26977694..26981024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g44700NANA6+26982446..26982774hypothetical protein
LOC_Os06g44710NANA6+26988510..26990397transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g44720NANA6+26990691..26991873transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28104.1.S1_at--87--4392Chr06:26972320..26972344 (25 bp)
CCAAGTCCGGCCGATGACAGCGAGG
LOC_Os06g44680
OsAffx.28104.1.S1_at--233--5651Chr06:26972305..26972329 (25 bp)
GACAGCGAGGGCGATGGTCCTTTTC
LOC_Os06g44680
OsAffx.28104.1.S1_at--642--6251Chr06:26972293..26972317 (25 bp)
GATGGTCCTTTTCCTGCATGTGGTG
LOC_Os06g44680
OsAffx.28104.1.S1_at--482--10391Chr06:26972285..26972309 (25 bp)
TTTTCCTGCATGTGGTGTGGATGGC
LOC_Os06g44680
OsAffx.28104.1.S1_at--1133--7751Chr06:26972058..26972138 (25 bp)
GGTGATGATTCGGACGCATGGATCA
LOC_Os06g44680
OsAffx.28104.1.S1_at--141--1851Chr06:26972045..26972069 (25 bp)
ACGCATGGATCAGAGGTGGATGCAA
LOC_Os06g44680
OsAffx.28104.1.S1_at--209--3491Chr06:26972016..26972040 (25 bp)
CAGGACAACGACGAGCTTGCTTGCA
LOC_Os06g44680
OsAffx.28104.1.S1_at--597--1551Chr06:26972003..26972027 (25 bp)
AGCTTGCTTGCAGTGCTCACGGCTA
LOC_Os06g44680
OsAffx.28104.1.S1_at--622--1131Chr06:26971992..26972016 (25 bp)
AGTGCTCACGGCTACCAGGGAGGTA
LOC_Os06g44680
OsAffx.28104.1.S1_at--521--6151Chr06:26971973..26971997 (25 bp)
GAGGTACAATCTGGCCTAATACTCA
LOC_Os06g44680
OsAffx.28104.1.S1_at--1114--8451Chr06:26971962..26971986 (25 bp)
TGGCCTAATACTCAGATCCAACGTT
LOC_Os06g44680
Target Sequence 
CCAAGTCCGGCCGATGACAGCGAGGGCGATGGTCCTTTTCCTGCATGTGGTGTGGATGGCGGTGGTGATGATTCGGACGC
ATGGATCAGAGGTGGATGCAATAGGCAGGACAACGACGAGCTTGCTTGCAGTGCTCACGGCTACCAGGGAGGTACAATCT
GGCCTAATACTCAGATCCAACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis