Browse Element(s) Details


Os.6293.1.S1_at

Description gb:AK110668.1
DB_XREF= gi:32995877
TID=Os.6293.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6293 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-F11, full insert sequence.
FL= gb:AK110668.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g446403/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44610Os.8437.1.S1_at11/116+26936183..26940027plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os06g44620Os.8020.1.S1_at11/116+26942172..269488924-coumarate-CoA ligase 2, putative, expressed
LOC_Os06g44620Os.8020.2.S1_at11/116+26942172..269488924-coumarate-CoA ligase 2, putative, expressed
LOC_Os06g44630OsAffx.12125.2.S1_at4/116+26951629..26952601hypothetical protein
LOC_Os06g44630OsAffx.5580.1.S1_at1/116+26951629..26952601hypothetical protein
LOC_Os06g44640Os.6293.1.S1_at3/116+26953367..26954288hypothetical protein
LOC_Os06g44650OsAffx.12125.2.S1_at5/116+26955805..26956210hypothetical protein
LOC_Os06g44660Os.20322.1.S1_at11/116+26956544..26957614Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed
LOC_Os06g44670OsAffx.5106.1.S1_at11/116+26959707..26960371hypothetical protein
LOC_Os06g44680OsAffx.28104.1.S1_at11/116+26971932..26972545hypothetical protein
LOC_Os06g44690NANA6+26977694..26981024transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6293.1.S1_at--1063--1091Chr06:26954123..26954147 (25 bp)
AGTGGAGACCGTCAAGCTGTTTTCT
LOC_Os06g44640
Os.6293.1.S1_at--1094--9451Chr06:26954176..26954200 (25 bp)
TCTGGAGCTACCTCATTGGCTACAA
LOC_Os06g44640
Os.6293.1.S1_at--861--11Chr06:26954190..26954214 (25 bp)
ATTGGCTACAACTGTGGCGCCCTGA
LOC_Os06g44640
Os.6293.1.S1_at--487--811Chr06:26954288..26954312 (25 bp)
ATGGTGGTTGCTAATGTTCTTCGAT
NONE
Os.6293.1.S1_at--385--10611Chr06:26954307..26954331 (25 bp)
TTCGATTACCCTTGCGACGGTGAAA
NONE
Os.6293.1.S1_at--208--831Chr06:26954336..26954360 (25 bp)
ATGGTTATCACCTTTCTTTCACTGA
NONE
Os.6293.1.S1_at--166--971Chr06:26954389..26954413 (25 bp)
AGGACCATCCGGGTGCTTGATCTGC
NONE
Os.6293.1.S1_at--347--2291Chr06:26954478..26954502 (25 bp)
AAATGCTGCCCGATTCATGTGAGAT
NONE
Os.6293.1.S1_at--992--6771Chr06:26954508..26954532 (25 bp)
GTTACTGACTTGGTATGCGAACTTC
NONE
Os.6293.1.S1_at--571--7811Chr06:26954553..26954577 (25 bp)
GGTTCTTTTTTCATTTACTGGACAT
NONE
Os.6293.1.S1_at--728--7371Chr06:26954594..26954618 (25 bp)
GTGACCGTGCACATTATCCTATATG
NONE
Target Sequence 
AGTGGAGACCGTCAAGCTGTTTTCTCCTGGGATGAACCAGCAAGATAGGTCCTTCTGGAGCTACCTCATTGGCTACAACT
GTGGCGCCCTGATCATCCTTGGCAATGCTAATAGAGAACTTGATCAGAGGGCAAAGGCTCTTGCTGAGGAACGGGAAGCT
CTTTGATGGTGGTTGCTAATGTTCTTCGATTACCCTTGCGACGGTGAAAATGTATGGTTATCACCTTTCTTTCACTGATT
CGAACATGTTCTGTTTCCATGCATGGAGGACCATCCGGGTGCTTGATCTGCTCTTCCCCTCGGTGCNAAATGAAATCTGT
AGTGCNAATTGATGGATTAAAATATGTGAAGTGTTAAATGCTGCCCGATTCATGTGAGATTGAATGTTACTGACTTGGTA
TGCGAACTTCAGGAAATCATGTCTTTTTGTGGTTCTTTTTTCATTTACTGGACATGTTAGGAAGAACAGCTGTGACCGTG
CACATTATCCTATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis