Browse Element(s) Details


Os.8437.1.S1_at

Description gb:AK060127.1
DB_XREF= gi:32970145
TID=Os.8437.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8437 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-302-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A01, full insert sequence.
FL= gb:AK060127.1 gb:AK060123.1 gb:AK104184.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4461011/11plant integral membrane protein TIGR01569 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44560NANA6+26912011..26912337retrotransposon protein, putative, unclassified
LOC_Os06g44570NANA6+26913275..26915990retrotransposon protein, putative, unclassified
LOC_Os06g44580Os.28943.1.S1_x_at2/116+26919260..26919709retrotransposon protein, putative, unclassified
LOC_Os06g44590NANA6+26920479..26926247retrotransposon protein, putative, unclassified
LOC_Os06g44600NANA6+26926882..26927208retrotransposon protein, putative, unclassified
LOC_Os06g44610Os.8437.1.S1_at11/116+26936183..26940027plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os06g44620Os.8020.1.S1_at11/116+26942172..269488924-coumarate-CoA ligase 2, putative, expressed
LOC_Os06g44620Os.8020.2.S1_at11/116+26942172..269488924-coumarate-CoA ligase 2, putative, expressed
LOC_Os06g44630OsAffx.12125.2.S1_at4/116+26951629..26952601hypothetical protein
LOC_Os06g44630OsAffx.5580.1.S1_at1/116+26951629..26952601hypothetical protein
LOC_Os06g44640Os.6293.1.S1_at3/116+26953367..26954288hypothetical protein
LOC_Os06g44650OsAffx.12125.2.S1_at5/116+26955805..26956210hypothetical protein
LOC_Os06g44660Os.20322.1.S1_at11/116+26956544..26957614Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed
LOC_Os06g44670OsAffx.5106.1.S1_at11/116+26959707..26960371hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8437.1.S1_at--377--3351Chr06:26939427..26939451 (25 bp)
CACGCACGCGTTGCAGTGGACTAAG
LOC_Os06g44610
Os.8437.1.S1_at--446--8591Chr06:26939490..26939514 (25 bp)
TGGTAGCCTTGTGTGTGCCATGCTC
LOC_Os06g44610
Os.8437.1.S1_at--161--4171Chr06:26939594..26939618 (25 bp)
CGCCGTCTTCCTTCGTGGGATAGAC
LOC_Os06g44610
Os.8437.1.S1_at--638--3691Chr06:26939639..26939663 (25 bp)
CTAGGCCTTCGTTTGTACTCTTATA
LOC_Os06g44610
Os.8437.1.S1_at--742--8751Chr06:26939652..26939676 (25 bp)
TGTACTCTTATATTGGGCTGCATAG
LOC_Os06g44610
Os.8437.1.S1_at--1115--3091Chr06:26939680..26939704 (25 bp)
AATTAAGCCCAACTATAGACCCAAG
LOC_Os06g44610
Os.8437.1.S1_at--23--8031Chr06:26939755..26939779 (25 bp)
GGAGTAATACTTATCCACATGTAGT
LOC_Os06g44610
Os.8437.1.S1_at--735--10191Chr06:26939797..26939821 (25 bp)
TATATGTTCTTGTACCTCTCTCTCA
LOC_Os06g44610
Os.8437.1.S1_at--35--291Chr06:26939835..26939859 (25 bp)
ATAGGTAATGTGCTTTGCTTCCTCT
LOC_Os06g44610
Os.8437.1.S1_at--782--10671Chr06:26939853..26939877 (25 bp)
TTCCTCTCTCTCTCATAAGAACAAT
LOC_Os06g44610
Os.8437.1.S1_at--199--971Chr06:26939906..26939930 (25 bp)
AGGACCAACCTTTGTGGCATGTTTC
LOC_Os06g44610
Target Sequence 
CACGCACGCGTTGCAGTGGACTAAGCTTTGCAACATCTACACCCGCTTCTGCGAGCAGGTTGCTGGTAGCCTTGTGTGTG
CCATGCTCGCTGCCGTCGGTACTGCCCTCCTCTCCGTCGTCTCCGCCCGCAACCTCTTCCGCCTCTATCCCTCCATGCTT
TCACCTNCGCCGTCTTCCTTCGTGGGATAGACATTGTCCACCGCCCCTCTCNCTAGGCCTTCGTTTGTACTCTTATATTG
GGCTGCATAGAAAAATTAAGCCCAACTATAGACCCAAGTAAAGCATANCTACCTTTTATTTTTCTTAACTTTTGTTAGAG
TGCATNTAGGAGTAATACTTATCCACATGTAGTATATACTCCACAGAAGGTATATGTTCTTGTACCTCTCTCTCAAAAAA
GTGTATCCATAGGTAATGTGCTTTGCTTCCTCTCTCTCTCATAAGAACAATAGTAGAGAAGATGGTTGTAAGGTAATTAA
GGACCAACCTTTGTGGCATGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis