Browse Element(s) Details


Os.8020.2.S1_at

Description gb:AK067261.1
DB_XREF= gi:32977279
TID=Os.8020.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8020 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096G06, full insert sequence.
FL= gb:AK067261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4462011/114-coumarate-CoA ligase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44580Os.28943.1.S1_x_at2/116+26919260..26919709retrotransposon protein, putative, unclassified
LOC_Os06g44590NANA6+26920479..26926247retrotransposon protein, putative, unclassified
LOC_Os06g44600NANA6+26926882..26927208retrotransposon protein, putative, unclassified
LOC_Os06g44610Os.8437.1.S1_at11/116+26936183..26940027plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os06g44620Os.8020.1.S1_at11/116+26942172..269488924-coumarate-CoA ligase 2, putative, expressed
LOC_Os06g44620Os.8020.2.S1_at11/116+26942172..269488924-coumarate-CoA ligase 2, putative, expressed
LOC_Os06g44630OsAffx.12125.2.S1_at4/116+26951629..26952601hypothetical protein
LOC_Os06g44630OsAffx.5580.1.S1_at1/116+26951629..26952601hypothetical protein
LOC_Os06g44640Os.6293.1.S1_at3/116+26953367..26954288hypothetical protein
LOC_Os06g44650OsAffx.12125.2.S1_at5/116+26955805..26956210hypothetical protein
LOC_Os06g44660Os.20322.1.S1_at11/116+26956544..26957614Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed
LOC_Os06g44670OsAffx.5106.1.S1_at11/116+26959707..26960371hypothetical protein
LOC_Os06g44680OsAffx.28104.1.S1_at11/116+26971932..26972545hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009611biological_processresponse to wounding
GO:0009621biological_processresponse to pathogenic fungi
GO:0009698biological_processphenylpropanoid metabolism
GO:0016207molecular_function4-coumarate-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8020.2.S1_at--86--1891Chr06:26945166..26945190 (25 bp)
ACGTTTCATGTAGTAGTTGCCACCA
LOC_Os06g44620
Os.8020.2.S1_at--861--4151Chr06:26945116..26945140 (25 bp)
CGCCCTCTGTTGCTGTAGTTGAATG
LOC_Os06g44620
Os.8020.2.S1_at--512--10751Chr06:26945098..26945122 (25 bp)
TTGAATGCAGTTTGGTTGCTCCTCC
LOC_Os06g44620
Os.8020.2.S1_at--839--6871Chr06:26945050..26945074 (25 bp)
GTATTCCCTTCCAAGACACGATTAG
LOC_Os06g44620
Os.8020.2.S1_at--11--8591Chr06:26944968..26944992 (25 bp)
TGGTAGCAAATCATCCTCAGTTCGC
LOC_Os06g44620
Os.8020.2.S1_at--234--7631Chr06:26944943..26944967 (25 bp)
GGGACAGCTCTCATCATGCAGGCAA
LOC_Os06g44620
Os.8020.2.S1_at--256--2751Chr06:26944845..26944869 (25 bp)
AAGAAGCTACCGTTATCCTGCAACA
LOC_Os06g44620
Os.8020.2.S1_at--1033--8171Chr06:26944784..26944808 (25 bp)
GGAACCACATAGCAACCTTGTCTGG
LOC_Os06g44620
Os.8020.2.S1_at--1060--3851Chr06:26944748..26944772 (25 bp)
CTGAGCCTATCTCTTGATTGCTTGT
LOC_Os06g44620
Os.8020.2.S1_at--1039--2311Chr06:26944717..26944741 (25 bp)
AAAGGGTGAGCACCTATCCTGACCT
LOC_Os06g44620
Os.8020.2.S1_at--783--2311Chr06:26944677..26944701 (25 bp)
AAAGGTTGCTACCTGCTTGGACGTA
LOC_Os06g44620
Target Sequence 
ACGTTTCATGTAGTAGTTGCCACCAATTTTTTTTCTCCCTTTCGCAAAGCCGCCCTCTGTTGCTGTAGTTGAATGCAGTT
TGGTTGCTCCTCCTCCTACATCCTAACTACTACCACGTATTCCCTTCCAAGACACGATTAGCAAGCGGGAGCTAGCAAAG
CACATGGTTGTTGGTATCCAGCTGATATGCAGGCACGTTGGTAGCAAATCATCCTCAGTTCGCGGGACAGCTCTCATCAT
GCAGGCAACCACTACAATGTTCGCAAGTAGAAGCTGAATCAGCAAGGGAACTCTTAACCCTTTTGATGAGATTGAGATGG
CAAGAAGCTACCGTTATCCTGCAACACATCTTGACCAATGCTATCACTATTACACCTAACTTGGAACCACATAGCAACCT
TGTCTGGTTCTCACCTTCCTGAGCCTATCTCTTGATTGCTTGTGTGGAGAAAGGGTGAGCACCTATCCTGACCTGCTTAT
GTCATAGTCAAAGGTTGCTACCTGCTTGGACGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8020.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis