Browse Element(s) Details


OsAffx.12125.2.S1_at

Description tigr:9634.m04324
TID=OsAffx.12125.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g446505/11hypothetical protein
LOC_Os06g446304/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44610Os.8437.1.S1_at11/116+26936183..26940027plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os06g44620Os.8020.1.S1_at11/116+26942172..269488924-coumarate-CoA ligase 2, putative, expressed
LOC_Os06g44620Os.8020.2.S1_at11/116+26942172..269488924-coumarate-CoA ligase 2, putative, expressed
LOC_Os06g44630OsAffx.12125.2.S1_at4/116+26951629..26952601hypothetical protein
LOC_Os06g44630OsAffx.5580.1.S1_at1/116+26951629..26952601hypothetical protein
LOC_Os06g44640Os.6293.1.S1_at3/116+26953367..26954288hypothetical protein
LOC_Os06g44650OsAffx.12125.2.S1_at5/116+26955805..26956210hypothetical protein
LOC_Os06g44660Os.20322.1.S1_at11/116+26956544..26957614Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed
LOC_Os06g44670OsAffx.5106.1.S1_at11/116+26959707..26960371hypothetical protein
LOC_Os06g44680OsAffx.28104.1.S1_at11/116+26971932..26972545hypothetical protein
LOC_Os06g44690NANA6+26977694..26981024transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12125.2.S1_at--845--431Chr06:26952395..26952419 (25 bp)
ATCTTCGTGAGGTTCGCTAGCGATG
LOC_Os06g44630
OsAffx.12125.2.S1_at--254--1513Chr06:26952458..26952482 (25 bp)
AGCACCGTGAGATTCGGCAACGCGT
LOC_Os06g44630
OsAffx.12125.2.S1_at--5--8231Chr06:26952473..26952497 (25 bp)
GGCAACGCGTCGAGCCATCGTGGAA
LOC_Os06g44630
OsAffx.12125.2.S1_at--520--4512Chr06:26952502..26952526 (25 bp)
GCCGACGATCGAGGTTGTTGTTGTT
LOC_Os06g44630
OsAffx.12125.2.S1_at--986--71NONE
ATTGCGAAGCGCGTCAGGATTTATA
NONE
OsAffx.12125.2.S1_at--286--10231Chr03:28301428..28301447 (20 bp)
TATTGATTGCATCTTCGGTGGTGCG
NONE
OsAffx.12125.2.S1_at--405--3211Chr06:26955822..26955846 (25 bp)
CAAGGCGTCTTCTTCCGAGATGAGA
LOC_Os06g44650
OsAffx.12125.2.S1_at--91--10031Chr06:26955851..26955875 (25 bp)
TAGACTACGGGTCGATCTGGCACGT
LOC_Os06g44650
OsAffx.12125.2.S1_at--655--6671Chr06:26955909..26955933 (25 bp)
GTTCGGCCTCAAAGGACTACACGAT
LOC_Os06g44650
OsAffx.12125.2.S1_at--519--7931Chr06:26956007..26956031 (25 bp)
GGATTCAGCAAACGCAAGGCCAACG
LOC_Os06g44650
OsAffx.12125.2.S1_at--210--2591Chr06:26956028..26956052 (25 bp)
AACGTAAGGCTATGTGCCTCCTATG
LOC_Os06g44650
Target Sequence 
ATCTTCGTGAGGTTCGCTAGCGATGGCGGGATGTGGCCGGAGAGCGAGTTGTGGCTGAGTCGGAGCACCGTGAGATTCGG
CAACGCGTCGAGCCATCGTGGAACGCCGCCGACGATCGAGGTTGTTGTTGTTGAGGTACGCGACGTCGAGGGTGGTGCAA
TTGCGAAGCGCGTCAGGATTTATAACATGGATTTATGGACTGGATATGAAATATTGATTGCATCTTCGGTGGTGCGGTCA
ACGGCGCGGCGAGCGGCGGCGACGGCGCAGGGGTACGGGCGGCGGTCGGCGGCGATGTCGTCCGGCGGCGGCAAGGCGTC
TTCTTCCGAGATGAGAAGGATAGACTACGGGTCGATCTGGCACGTCATCGCCGGCAATATTGGCCTCGGCGTCACCCTGT
TCGGCCTCAAAGGACTACACGATATGCGGATGGAGGAACGGGAAGAGAAATGGAATAGGGAACGGGAAGAGCGACTCGAG
GCGGCTAGGAAGGAATGGATTCAGCAAACGCAAGGCCAACGTAAGGCTATGTGCCTCCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12125.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis