Browse Element(s) Details


OsAffx.12160.1.S1_at

Description tigr:9630.m02175
TID=OsAffx.12160.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2259011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22540Os.46314.2.S1_x_at5/112+13445136..13446404transposon protein, putative, unclassified
LOC_Os02g22540OsAffx.828.1.S1_x_at1/112+13445136..13446404transposon protein, putative, unclassified
LOC_Os02g22540Os.47114.1.S1_x_at1/112+13445136..13446404transposon protein, putative, unclassified
LOC_Os02g22550OsAffx.17554.1.S1_at2/112+13449175..13449858retrotransposon protein, putative, unclassified
LOC_Os02g22550OsAffx.22711.4.A1_x_at1/112+13449175..13449858retrotransposon protein, putative, unclassified
LOC_Os02g22560NANA2+13450953..13451818retrotransposon protein, putative, unclassified
LOC_Os02g22570OsAffx.20729.1.S1_x_at3/112+13453650..13462703retrotransposon protein, putative, unclassified
LOC_Os02g22570Os.45976.1.S1_x_at1/112+13453650..13462703retrotransposon protein, putative, unclassified
LOC_Os02g22570OsAffx.28104.1.S1_at1/112+13453650..13462703retrotransposon protein, putative, unclassified
LOC_Os02g22580OsAffx.16407.2.S1_x_at1/112+13467193..13467580hypothetical protein
LOC_Os02g22580Os.40028.1.A1_at1/112+13467193..13467580hypothetical protein
LOC_Os02g22590OsAffx.12160.1.S1_at11/112+13467706..13470238expressed protein
LOC_Os02g22590OsAffx.16407.2.S1_x_at2/112+13467706..13470238expressed protein
LOC_Os02g22590Os.46303.1.S1_x_at2/112+13467706..13470238expressed protein
LOC_Os02g22590OsAffx.31874.1.S1_at1/112+13467706..13470238expressed protein
LOC_Os02g22600NANA2+13471763..13472498hypothetical protein
LOC_Os02g22610NANA2+13474881..13478035transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g22620NANA2+13481010..13483606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22630OsAffx.24388.1.S1_at8/112+13485651..13488773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g22640NANA2+13491955..13492290retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12160.1.S1_at--104--6031Chr02:13469659..13469683 (25 bp)
GAGAGGTATGCATCAATGAGCCCAA
LOC_Os02g22590
OsAffx.12160.1.S1_at--568--8991Chr02:13469613..13469637 (25 bp)
TGAAGGCCCGTGTGTACAAGCAATT
LOC_Os02g22590
OsAffx.12160.1.S1_at--971--10431Chr02:13469486..13469570 (25 bp)
TTATGTCAAAGCTCCACTTGGTGAT
LOC_Os02g22590
OsAffx.12160.1.S1_at--192--7051Chr02:13469422..13469446 (25 bp)
GTAAATGATTGTTCTACACTGCAGC
LOC_Os02g22590
OsAffx.12160.1.S1_at--368--1731Chr02:13469388..13469412 (25 bp)
ACCATGCATTATTACAGCCCGTTGA
LOC_Os02g22590
OsAffx.12160.1.S1_at--580--2151Chr02:13469375..13469399 (25 bp)
ACAGCCCGTTGATAGGACTGGACCT
LOC_Os02g22590
OsAffx.12160.1.S1_at--953--5731Chr02:13469276..13469384 (25 bp)
GACTGGACCTGGAAGTGATCAACAA
LOC_Os02g22590
OsAffx.12160.1.S1_at--751--3271Chr02:13469257..13469281 (25 bp)
CAACAACACATGATCACACCTCGGT
LOC_Os02g22590
OsAffx.12160.1.S1_at--1099--4271Chr02:13469239..13469263 (25 bp)
CCTCGGTGTCTACCATTTACAGTGA
LOC_Os02g22590
OsAffx.12160.1.S1_at--291--791Chr02:13469190..13469214 (25 bp)
ATGTGGATCACACTGGATCCCCTTT
LOC_Os02g22590
OsAffx.12160.1.S1_at--410--2411Chr02:13469138..13469162 (25 bp)
AAACAGCCATACACTACCTGCAAAT
LOC_Os02g22590
Target Sequence 
GAGAGGTATGCATCAATGAGCCCAAAGAAAAAGGAGGCGAGGAAAATGAAGGCCCGTGTGTACAAGCAATTGAAGGAGGA
TGAATACTCAGGTTTAACTCAAACAACTACTAATTATGTCAAAGCTCCACTTGGTGATATTACAAATGTTAGTGTTGATG
ATTTAAGAAGATGCCACGTAAATGATTGTTCTACACTGCAGCAAGGATCAAACCATGCATTATTACAGCCCGTTGATAGG
ACTGGACCTGGAAGTGATCAACAACACATGATCACACCTCGGTGTCTACCATTTACAGTGATCAACAATGTAGCTCAGTA
TGATAATGTGGATCACACTGGATCCCCTTTCAGCTGCATACTTCAAGGTGCAACACAAAACAGCCATACACTACCTGCAA
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis