Browse Element(s) Details


Os.47930.1.S1_at

Description gb:AK064060.1
DB_XREF= gi:32974078
TID=Os.47930.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47930 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033069A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-F09, full insert sequence.
FL= gb:AK064060.1 gb:AK099377.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0792010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07870Os.47485.1.S1_at11/112+4120170..4127530Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os02g07880Os.9124.1.S1_at11/112+4129132..4133816expressed protein
LOC_Os02g07890Os.11533.1.S1_at11/112+4134900..4135625expressed protein
LOC_Os02g07900Os.6353.1.S1_at11/112+4135894..4140379Clathrin assembly protein, putative, expressed
LOC_Os02g07910OsAffx.2543.1.S1_at11/112+4141503..4142223fiber protein Fb15, putative, expressed
LOC_Os02g07920Os.47930.1.S1_at10/112+4144355..4147007expressed protein
LOC_Os02g07930OsAffx.24157.1.S1_s_at11/112+4149963..4151231B-box zinc finger family protein, expressed
LOC_Os02g07940NANA2+4157105..4158502retrotransposon protein, putative, unclassified
LOC_Os02g07950NANA2+4159538..4160221retrotransposon protein, putative, unclassified
LOC_Os02g07960Os.38295.1.S3_at11/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07960Os.38295.1.S2_at11/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07960Os.38295.1.S1_at10/112+4165204..4175209Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47930.1.S1_at--48--8311Chr02:4145964..4145988 (25 bp)
GGCTATGCTGGTGGGTACGAACATA
LOC_Os02g07920
Os.47930.1.S1_at--950--9931Chr02:4145949..4145973 (25 bp)
TACGAACATAATGCGGCTGCAGCGA
LOC_Os02g07920
Os.47930.1.S1_at--387--9911Chr02:4145900..4145924 (25 bp)
TACTGCCACCGGAGGTTGGTAGGAT
LOC_Os02g07920
Os.47930.1.S1_at--685--10091Chr02:4145860..4145884 (25 bp)
TAGGAGCGATATGCCGGCAGAGATT
LOC_Os02g07920
Os.47930.1.S1_at--691--1131Chr02:4145786..4145810 (25 bp)
AGTCCAAGCTCACTGGGATGGCCTT
LOC_Os02g07920
Os.47930.1.S1_at--876--2431Chr02:4144611..4144635 (25 bp)
AAAAGGAAAGCCCTCCAAGCTGCAC
LOC_Os02g07920
Os.47930.1.S1_at--13--5091Chr02:4144578..4144602 (25 bp)
GCACCAGATTGGTTCTCTATTCTAT
LOC_Os02g07920
Os.47930.1.S1_at--127--10711Chr02:4144528..4144552 (25 bp)
TTGCCGAGAGGCGTTCCAAGGGATT
LOC_Os02g07920
Os.47930.1.S1_at--668--7671Chr02:4144509..4144533 (25 bp)
GGGATTCCTCACAAAAGCAGAGACT
LOC_Os02g07920
Os.47930.1.S1_at--73--3471Chr02:4144431..4144455 (25 bp)
CAGTGTATTTCGGTTTTGTTGTCTA
LOC_Os02g07920
Os.47930.1.S1_at--183--7191Chr02:4144355..4144379 (25 bp)
GTCGTTGGAAGCAACCTTTTGCACC
NONE
Target Sequence 
GGCTATGCTGGTGGGTACGAACATAATGCGGCTGCAGCGACAGCACCGCCAATCCAGCAGCCAATACTGCCACCGGAGGT
TGGTAGGATTGGAGGGAAGAGAGGTAGGAGCGATATGCCGGCAGAGATTTTAGAGGTTAACCAGGCAGAGCTGATGAAGA
ACCGACCGAGGGAGGATAAGTCCAAGCTCACTGGGATGGCCTTCGGCCCTAGTTACCAGCCCGCCCCTTCAGCAAAAGGA
AAGCCCTCCAAGCTGCACAAAAGAAAGCACCAGATTGGTTCTCTATTCTATGACATGAAGCAAAAGGAGATGGAGCTTGC
CGAGAGGCGTTCCAAGGGATTCCTCACAAAAGCAGAGACTCAAGCAAAGTATGGATGGTGAGCATGGTACGTCGGGCATA
GGATGGAATTGAACAGTGTATTTCGGTTTTGTTGTCTAATTATTTTGTTGTAAATTGTTCTTGATAATATAAACTGGAAT
TTAAAACTAGTCGTTGGAAGCAACCTTTTGCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis