Browse Element(s) Details


Os.47932.1.S1_at

Description gb:AK073007.1
DB_XREF= gi:32983030
TID=Os.47932.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47932 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023143M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143M19, full insert sequence.
FL= gb:AK073007.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0587010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05820Os.52804.1.S1_at11/112+2869692..2874060Protein kinase domain containing protein, expressed
LOC_Os02g05830Os.37946.1.S1_at11/112+2874932..2876450Ribulose bisphosphate carboxylase, small subunit family protein, expressed
LOC_Os02g05840Os.10052.1.S1_at11/112+2876557..2882175expressed protein
LOC_Os02g05850NANA2+2887326..2892035transposon protein, putative, unclassified
LOC_Os02g05860NANA2+2893006..2895238retrotransposon protein, putative, unclassified
LOC_Os02g05870Os.47932.1.S1_at10/112+2898895..2903749expressed protein
LOC_Os02g05870Os.23622.1.A1_at1/112+2898895..2903749expressed protein
LOC_Os02g05880Os.15979.1.A1_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05880OsAffx.24118.1.S1_x_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05880Os.53690.1.S1_x_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05890Os.9792.1.S1_at11/112+2922459..2925071expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47932.1.S1_at--91--8012Chr04:18356868..18356887 (20 bp)
GGATGGCAACCCTTGTGAAAACACT
NONE
Os.47932.1.S1_at--545--3811NONE
CTCCTTGGAATTTGCAGCCTTCGAA
NONE
Os.47932.1.S1_at--1105--9971Chr02:2899359..2899383 (25 bp)
TACCATTTCGAGGATTTGTCAGGCA
LOC_Os02g05870
Os.47932.1.S1_at--495--7051Chr02:2899290..2899314 (25 bp)
GTAACCACATCCAGTTTCTTGGCTG
LOC_Os02g05870
Os.47932.1.S1_at--279--3231Chr02:2899095..2899119 (25 bp)
CAAGTTTTGTTGTTCCTCAGTCTGC
LOC_Os02g05870
Os.47932.1.S1_at--290--9651Chr02:2899079..2899103 (25 bp)
TCAGTCTGCTGCTGGTTTACAAGGC
LOC_Os02g05870
Os.47932.1.S1_at--180--1971Chr02:2899032..2899056 (25 bp)
ACTGTAGTGCCCATGGTGACATCTA
LOC_Os02g05870
Os.47932.1.S1_at--352--451Chr02:2899012..2899036 (25 bp)
ATCTAATTCTGTACCCACCATGTAA
LOC_Os02g05870
Os.47932.1.S1_at--1125--9991Chr02:2898986..2899010 (25 bp)
TAGAGGTGGAGGCATCCTTTCCCCA
LOC_Os02g05870
Os.47932.1.S1_at--385--3331Chr02:2898963..2898987 (25 bp)
CACTAGCATTTTCTTTGGTTTCAGC
LOC_Os02g05870
Os.47932.1.S1_at--269--6831Chr02:2898946..2898970 (25 bp)
GTTTCAGCACCACTCAGTAGTCAGT
LOC_Os02g05870
Target Sequence 
GGATGGCAACCCTTGTGAAAACACTCAATATGCTCCTTGGAATTTGCAGCCTTCGAAGAAGCTTGATGGGTTCCTTGAGA
GCAGAAAATTGAATGAAGGATTGGATTGTGATACCATTTCGAGGATTTGTCAGGCATATGATTTGGACAAGATTGATGTT
CTGAAGTACAGGGATTTGGAGTAACCACATCCAGTTTCTTGGCTGCCGTGGTGATTTTTTTGCCAGCTAATGTTTGTGTG
GTAGAAATGAATTCCGTCGTGGAGAACTAGCTGAACTGCTGAAGGGTACACGAGTGACACGAGACTTCCAAAATTAGTGA
CTAATGCAGATTTTTTTTTTTTGCAAGGGATTTGGAGTAGTAGCATTACAATTCACAAGTTTTGTTGTTCCTCAGTCTGC
TGCTGGTTTACAAGGCAGAAAAACAGACAGGACCTAAAACTGTAGTGCCCATGGTGACATCTAATTCTGTACCCACCATG
TAAATAGAGGTGGAGGCATCCTTTCCCCACTAGCATTTTCTTTGGTTTCAGCACCACTCAGTAGTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis