Browse Element(s) Details


Os.47956.1.S1_at

Description gb:AK066555.1
DB_XREF= gi:32976573
TID=Os.47956.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47956 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013071B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071B16, full insert sequence.
FL= gb:AK066555.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4779011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47770OsAffx.27357.1.S1_at11/115+27277679..27284205Protein kinase domain containing protein, expressed
LOC_Os05g47770OsAffx.25952.1.S1_s_at1/115+27277679..27284205Protein kinase domain containing protein, expressed
LOC_Os05g47780Os.19172.1.S1_at11/115+27294266..27298959CHY zinc finger family protein, expressed
LOC_Os05g47780OsAffx.27359.1.S1_x_at10/115+27294266..27298959CHY zinc finger family protein, expressed
LOC_Os05g47790Os.47956.1.S1_at11/115+27300132..27303737expressed protein
LOC_Os05g47799NANA5+27305791..27307255NA
LOC_Os05g47810OsAffx.15139.1.S1_x_at10/115+27320305..27321335hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47956.1.S1_at--976--5531Chr05:27300775..27300799 (25 bp)
GAAACTCCAGGTGCTCTGAAACTAA
LOC_Os05g47790
Os.47956.1.S1_at--818--151Chr05:27300751..27300775 (25 bp)
ATTTTGGCCAAGACAGCAGCAACCT
LOC_Os05g47790
Os.47956.1.S1_at--900--1471Chr05:27300734..27300758 (25 bp)
AGCAACCTGATACACCCTGGAGAGG
LOC_Os05g47790
Os.47956.1.S1_at--925--1591Chr05:27300694..27300718 (25 bp)
AGCTGCTACTAACAAACGTTCGCCG
LOC_Os05g47790
Os.47956.1.S1_at--1141--9331Chr05:27300469..27300493 (25 bp)
TCGCGTTCGATTCCGTCATGGAGTG
LOC_Os05g47790
Os.47956.1.S1_at--1010--831Chr05:27300452..27300476 (25 bp)
ATGGAGTGCTTGGACTCGCTGTTCA
LOC_Os05g47790
Os.47956.1.S1_at--985--1811Chr05:27300428..27300452 (25 bp)
ACCCAGTTCTGCGACTCAGGATACA
LOC_Os05g47790
Os.47956.1.S1_at--543--6471Chr05:27300409..27300433 (25 bp)
GATACAGGTCGTTCTCGAGGGTTCC
LOC_Os05g47790
Os.47956.1.S1_at--235--1291Chr05:27300262..27300286 (25 bp)
AGATCGGCGTGGATGTCCTGCACGA
LOC_Os05g47790
Os.47956.1.S1_at--1082--10231Chr05:27300233..27300257 (25 bp)
TTTGAGATTGGTGCCCAGATCGAAC
LOC_Os05g47790
Os.47956.1.S1_at--1162--491Chr05:27300215..27300239 (25 bp)
ATCGAACGGGATCTGCTCCAAGAGC
LOC_Os05g47790
Target Sequence 
GAAACTCCAGGTGCTCTGAAACTAATTTTGGCCAAGACAGCAGCAACCTGATACACCCTGGAGAGGTTGCAGCAACTGTT
GAGCTGCTACTAACAAACGTTCGCCGGTCTACTTCTACTACTCCTCCACGAAGAAGAAGAAGAAGAAGAAGAACGGGTTC
AGCTTCAACGCCGGCGTCGTCAAGGCCACAGAAGGGGAGAAGAGCAGGAGCCCGCTGGGAAGCCTCGCGTTCGATTCCGT
CATGGAGTGCTTGGACTCGCTGTTCACCCAGTTCTGCGACTCAGGATACAGGTCGTTCTCGAGGGTTCCCCTGATCTGCC
CCGAGGAGAGGCTGGCTGCTCAGGTGGACAGGGAGATCGCGAGGTGCAGCGGCATGGCCGGGAAGGAGGTGGATGAGCTG
ATCGCGAGCGACGTCCAGCACTCGGGGGTGGAGATCGGCGTGGATGTCCTGCACGAGGCGTTTGAGATTGGTGCCCAGAT
CGAACGGGATCTGCTCCAAGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis