Browse Element(s) Details


Os.47992.1.S1_at

Description gb:AK058430.1
DB_XREF= gi:32968448
TID=Os.47992.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47992 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-015-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-E10, full insert sequence.
FL= gb:AK058430.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g080501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08020OsAffx.29094.1.S1_at11/118+4540627..4543036expressed protein
LOC_Os08g08030OsAffx.29095.1.S1_at11/118+4545166..4551186Double-strand break repair protein MRE11, putative, expressed
LOC_Os08g08040Os.12091.1.S1_at10/118+4556085..4559028U6 snRNA-associated Sm-like protein LSm7, putative, expressed
LOC_Os08g08050Os.47992.1.S1_at1/118+4560471..4563589retrotransposon protein, putative, unclassified
LOC_Os08g08060Os.5348.1.S1_at11/118+4564674..4574398Pep3/Vps18/deep orange family protein, expressed
LOC_Os08g08070Os.10571.1.S1_at11/118+4575088..4577145Glucose transporter, putative, expressed
LOC_Os08g08070OsAffx.7485.1.S1_x_at1/118+4575088..4577145Glucose transporter, putative, expressed
LOC_Os08g08080Os.27398.1.S1_at11/118+4580134..4584889LOC564510 protein, putative, expressed
LOC_Os08g08090Os.55321.1.S1_at11/118+4587327..4587829expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47992.1.S1_at--507--6331Chr08:4560530..4560554 (25 bp)
GATGCTCAAGCTAACTTAGCCGTTG
LOC_Os08g08050
Os.47992.1.S1_at--1043--1651Chr08:4560434..4560537 (25 bp)
AGCCGTTGAACTTCCTGTTGGCGAA
NONE
Os.47992.1.S1_at--1132--5911Chr08:4560403..4560427 (25 bp)
GAGCAGGCGAACTTCCTATGACCTA
NONE
Os.47992.1.S1_at--372--4311Chr08:4560389..4560413 (25 bp)
CCTATGACCTAGTGATTGCGATCGA
NONE
Os.47992.1.S1_at--913--791Chr08:4560322..4560346 (25 bp)
ATGTGGCAACATTCTATTTCCAGTT
NONE
Os.47992.1.S1_at--1161--7592Chr07:15065875..15065894 (20 bp)
GGGCAAGTTTCACCAAGTTTACAGT
NONE
Os.47992.1.S1_at--1049--6771Chr08:4560240..4560264 (25 bp)
GTTAGCCAGCATGTTTGCTAGCTTG
NONE
Os.47992.1.S1_at--979--4851Chr08:4560224..4560248 (25 bp)
GCTAGCTTGAACTGCAATGCTGACA
NONE
Os.47992.1.S1_at--493--10011Chr08:4560123..4560147 (25 bp)
TAGCAATTATGCTCGTTCCCAGTAG
NONE
Os.47992.1.S1_at--1075--5051Chr08:4560052..4560076 (25 bp)
GCAGCGAGTAGATCCGTGTAACGAG
NONE
Os.47992.1.S1_at--181--331Chr08:4559988..4560012 (25 bp)
ATACTGCAGCTATTTCTGTTGCCTG
NONE
Target Sequence 
GATGCTCAAGCTAACTTAGCCGTTGAACTTCCTGTTGGCGAAGTTCAAGAGCAGGCGAACTTCCTATGACCTAGTGATTG
CGATCGAGAGTAATTTGTGCATTGCACCAACTTTNATCGGAGTGAAGCTATGTGGCAACATTCTATTTCCAGTTGATTCA
GATGGTCAGNCCCAACGACTCGNATGTGGGGCAAGTTTCACCAAGTTTACAGTTAGCCAGCATGTTTGCTAGCTTGAACT
GCAATGCTGACATGGTAATTTCAGTGGGAGGAGATAGTCTCTAAATTTCTGTGTAATGGCGTAGGGATGAATGATTAGAA
CTNGAGGCTAGCAATTATGCTCGTTCCCAGTAGCAATACTACAGAACTGTTAACTATTTTTGAGCCAATATGAGGTGANG
CAGCGAGTAGATCCGTGTAACGAGGTACAGATTGAGATTGGCAGTATAACAAAATACAAAGGGATACTGCAGCTATTTCT
GTTGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis